![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.004G211300.1 | ||||||||
Common Name | HB2, POPTR_0004s22090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 92841 Da PI: 6.21 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Potri.004G211300.1 28 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85 5789****************************************************97 PP | |||||||
2 | START | 144.7 | 8.8e-46 | 163 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee++ e+++ka+ ++ Wv+++ +++g++++ +f+ s+ + g a+ra+g+v ++ +e+l+d+ W ++++ e+ g g+ Potri.004G211300.1 163 IAEETLSEFLAKATGTALEWVQMPGMKPGPDSIGIFSISQRCGGVAARACGLVSLEPK-KIAEILKDRSSWFRDCRNLEVFTMFPAGngGT 252 7899******************************************************.6677777777*******9999999998888** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++ +a+++l+p Rd +++Ry+ +l+ g++v++++S++ p +++vRae+lpSg+li+p+++g s +++v+h +l+++++ Potri.004G211300.1 253 IELVYSQIYAPTTLAPaRDMWTLRYTTSLENGSLVVCERSLSGYGAGPDaaaAAQFVRAEMLPSGYLIRPCEGG-SIIHIVDHLNLQAWSV 342 ******************************************99999988999********************9.**************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+ a ++k++ a+l++ + Potri.004G211300.1 343 PEVLRPLYESSKAVAQKMTIAALRYVR 369 ***********************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 10 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-16 | 25 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.83E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 7.6E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.73E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 24.162 | 153 | 380 | IPR002913 | START domain |
CDD | cd08875 | 1.30E-65 | 157 | 370 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.3E-17 | 162 | 365 | IPR023393 | START-like domain |
SMART | SM00234 | 2.0E-38 | 162 | 371 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.43E-30 | 162 | 371 | No hit | No description |
Pfam | PF01852 | 3.4E-43 | 163 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 5.8E-47 | 697 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 847 aa Download sequence Send to blast |
MAMEVAPLHR ESSSSGSINK HLTDDGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE 60 CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGFMRQQ LQTVTTDASC DSVVATPQHS LRDANNPAGL LSIAEETLSE FLAKATGTAL 180 EWVQMPGMKP GPDSIGIFSI SQRCGGVAAR ACGLVSLEPK KIAEILKDRS SWFRDCRNLE 240 VFTMFPAGNG GTIELVYSQI YAPTTLAPAR DMWTLRYTTS LENGSLVVCE RSLSGYGAGP 300 DAAAAAQFVR AEMLPSGYLI RPCEGGSIIH IVDHLNLQAW SVPEVLRPLY ESSKAVAQKM 360 TIAALRYVRQ VAHETSGEVV YGLGRQPAVL RTFNQRLSRG FNDAINGFND DGWSLMNADG 420 AEDVIIAVNS TKNLIGANNS AHSLSFLGGI LCAKASMLLQ NVHPAVLVCF LREHHAEWAD 480 FSVDAYSAAL WKAGSYAYPG MRPMRFTGSQ ITMPLGHTIE QEDLLEVIRL EGHSFAQEDA 540 FVSQDIHLLQ ICSGIDENAV GACSELVFAP IDETFPDDAP LLPSGFRIIS LESKAKDTQE 600 VLTTNCTLDL TSSLEAGLAI NHTAVDGSSC HSLRSVLTIA FQFPFESNLQ DNVATMARQY 660 VRSVISSVQR VAMAISPSGL SPVLGPKLSA GSPEALTLAH WICQSHRQVL LNYHLGAELL 720 RSDSVGGDSV LKHLWHHPDA ILCCSLKSLP VFIFANQAGL DMLETTLVAL QDITLDKIFN 780 ESGRQALYTE FAKLMQQGFA CLPAGICMST MGRNVSYEQA VAWKVLSAEE NAVHCIAFSF 840 VNWSFL* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.004G211300.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY919617 | 0.0 | AY919617.1 Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455683.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | Q5D1M5 | 0.0 | Q5D1M5_POPTR; Class III HD-Zip protein 2 | ||||
STRING | POPTR_0004s22090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6633 | 31 | 47 |
Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.004G211300.1 |
Entrez Gene | 18098199 |