PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G209000.1

Common Name

POPTR_0004s21880g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 790aa MW: 90574.9 Da PI: 6.8171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G209000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.7e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v++++ HnHel+ Potri.004G209000.1 82 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSSFVRGHNHELV 172 9*************************************998888545677889*********************************8 PP FAR1 91 p 91 p Potri.004G209000.1 173 P 173 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-29	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-33	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	4.3E-12	562	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.905	574	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-9	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MENEVLEFDI GLGSGADDDD DDDAVDIDID DDLPSTPPHH LTTSHNSAST SATRIYLPEG 60 DLSDLEPYEG MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF 120 RNLNEKRTKD REIKRPRVIT RVGCKASLSV KMQDSGKWVV SSFVRGHNHE LVPPDQVHCL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQRSM 240 EGDIQLLLDY LRQMQSENPD FFYALQGDDG QFTGNVLWAD PRARANYSYF GDTVTFDTTY 300 RSNRYRLPFA PFTGVNHHGQ PVLFGCAFIL NETEASFVWL FQTWLTAMSG RHPLSITTDH 360 DAVIRLAIMQ VFPETRHRFC KWHIFKKCQE KLSHVLLKHP TFESEFHKCV NLTELIEEFE 420 SCWLSLVDRY ELRDHEWLQT IYSDRRQWVP VYLRDAFFAE MSITQRSDSM NSYFDGYVNA 480 STNLNHFFKL YERAIESRNE KEVKADYDTM NTNPVLKTPS PMEKQASGLY TRKLFVRFQE 540 ELVGTLTFMA SKSEDDGESI TYQVAKYGED HKAYHVKFNV LEMKATCSCQ MFEFSGLLCR 600 HVLTVFRVTN VLTLPSRYIL KRWTRNAKSN VILEERPTDV YTGYLESHTV RYNTLRHEAF 660 KFVEEGSKSL DTYNVAMGVL QEATTRVAQA TKNEGRAGDV NGRNKGDSAS SGIRANYTSG 720 NHLGISGQPL SEEDMDKKIQ ELRDELEYAN RKCEVYRANL LSVLKDIEDH KQQLSIKVQS 780 IKISMKGSI*

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MENEVLEFDI GLGSGADDDD DDDAVDIDID DDLPSTPPHH LTTSHNSAST SATRIYLPEG  60
DLSDLEPYEG MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNLNEKRTKD REIKRPRVIT RVGCKASLSV KMQDSGKWVV SSFVRGHNHE LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQRSM  240
EGDIQLLLDY LRQMQSENPD FFYALQGDDG QFTGNVLWAD PRARANYSYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PVLFGCAFIL NETEASFVWL FQTWLTAMSG RHPLSITTDH  360
DAVIRLAIMQ VFPETRHRFC KWHIFKKCQE KLSHVLLKHP TFESEFHKCV NLTELIEEFE  420
SCWLSLVDRY ELRDHEWLQT IYSDRRQWVP VYLRDAFFAE MSITQRSDSM NSYFDGYVNA  480
STNLNHFFKL YERAIESRNE KEVKADYDTM NTNPVLKTPS PMEKQASGLY TRKLFVRFQE  540
ELVGTLTFMA SKSEDDGESI TYQVAKYGED HKAYHVKFNV LEMKATCSCQ MFEFSGLLCR  600
HVLTVFRVTN VLTLPSRYIL KRWTRNAKSN VILEERPTDV YTGYLESHTV RYNTLRHEAF  660
KFVEEGSKSL DTYNVAMGVL QEATTRVAQA TKNEGRAGDV NGRNKGDSAS SGIRANYTSG  720
NHLGISGQPL SEEDMDKKIQ ELRDELEYAN RKCEVYRANL LSVLKDIEDH KQQLSIKVQS  780
IKISMKGSI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.5421	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G209000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006384877.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	U5GKF1	0.0	U5GKF1_POPTR; Uncharacterized protein
STRING	POPTR_0004s21880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.004G209000.1
Entrez Gene	18098178

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]