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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.004G208700.1 |
| Common Name | POPTR_0004s21850g |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 421aa MW: 46819.2 Da PI: 8.2286 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G208700.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 330.1 | 4.3e-101 | 39 | 419 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l++lLl+cA++ ssg+l++a+a+L ++s l+s gd mqRlaa f+ ALa rl++ ++++ kal+ +++ ++ a lf ++P+l
Potri.004G208700.1 39 LIQLLLKCAKHASSGNLHRADACLLEISVLSSILGDCMQRLAARFASALAIRLVKRWPGIHKALNQAQQP---KVDLDRAKLLFTRTFPYL 126
689*************************************************************999998...6667777888******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
f++ + +++l a+++e+ +Hi+D++ + W+aLl+ +a+ p+gpp+l+iT v+ sk le++g+rL k Ae++gvpf+fn +
Potri.004G208700.1 127 SFAYAIIAKTLLHAMANERVIHIVDLGSGDSNLWVALLRGFANSPHGPPHLKITCVNG----SKAILEKLGQRLVKEAESVGVPFQFNS-I 212
**********************************************************....9**************************.6 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
+l +l+ ++++ +gEala ++l+lh ll ++ + +++ ++L +++s+sP+++ vveqeadhn +++++rf+e
Potri.004G208700.1 213 NASLRELTKDMFKAGSGEALAFVSILNLHVLLseddqvvahfgvnkNDGIKDCKQIGDFLAMIRSMSPTLLFVVEQEADHNLNRLVDRFVE 303
999*****************************************88666666678999********************************* PP
GRAS 260 aleyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
l+yysa+fds++a+l+++ +er ++E++ +grei+n+vaceg er+erhe++++W rl +aGFkpv++ ++ ++ak ++ ++++g
Potri.004G208700.1 304 GLNYYSAVFDSIDATLASNLasDERLVLEEM-FGREIENIVACEGLERIERHERYARWVVRLAQAGFKPVRFWHSSGEDAKQIMDAFGKNG 393
***************9987555999999999.*********************************************************** PP
GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
y+ e+ l+++W++rpL++++aW+
Potri.004G208700.1 394 YKTVIERTGLMICWRERPLYALTAWT 419
*************************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009739 | Biological Process | response to gibberellin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MSSMTPLLKP DVTLSLTLSP SSPSPHDQTL KPEERGIRLI QLLLKCAKHA SSGNLHRADA 60
CLLEISVLSS ILGDCMQRLA ARFASALAIR LVKRWPGIHK ALNQAQQPKV DLDRAKLLFT 120
RTFPYLSFAY AIIAKTLLHA MANERVIHIV DLGSGDSNLW VALLRGFANS PHGPPHLKIT 180
CVNGSKAILE KLGQRLVKEA ESVGVPFQFN SINASLRELT KDMFKAGSGE ALAFVSILNL 240
HVLLSEDDQV VAHFGVNKND GIKDCKQIGD FLAMIRSMSP TLLFVVEQEA DHNLNRLVDR 300
FVEGLNYYSA VFDSIDATLA SNLASDERLV LEEMFGREIE NIVACEGLER IERHERYARW 360
VVRLAQAGFK PVRFWHSSGE DAKQIMDAFG KNGYKTVIER TGLMICWRER PLYALTAWTC 420
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