PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Potri.004G205500.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 664aa MW: 74404.6 Da PI: 6.277

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G205500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	21.6	4.4e-07	614	650	2	31
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.......vclTv 31 ek+isle+l+++F++++kdAAk++g ++ T+ Potri.004G205500.2 614 EKTISLEVLRQHFAGSLKDAAKSIGgrrlfttIGNTI 650 79**********************9888888888776 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MDDGNGPNFI PDSAFENFSG SSMDLDFMDD LLYEGCWLET ADEFNFLQAG TISSSDLNDP 60 RQYFPLFEPN SSNSNVNSHQ ENYQGVDELG GIGSQNQNIR SLDQSGSFPV ESNELGRRLW 120 IAPTATGPSS PVRDRLMHAI GQVKECTKDR DVLIQIWVPV KKEGKNVLTT IGQPYLLDRK 180 CQSLASYRNV SKDFQFPADE DSKELVGLPG RVFLRELPEW TPDVRFFSGV EYLRKNHAKQ 240 FNIRGSLAVP VFEQGSRTCL GVIEVVTTTR DISYRPDLEN VCKALEAVDL RSPQDFCPPS 300 LKVCKEVCQA AAPEISKILE SVCKAHRLPL ALAWAPCFRE GKGGCRHFDE SYSYFISLVN 360 SAYFVAERDD WGFYMACSEQ YLSFGHGIVG RAFATNKQCL STDVAAFSKT DYPLSHHAKM 420 FGLHAAIAIP LQSSYAGSAD FVLELFLPKD CRNTEEQKQM WDILPITVQQ ACQSWHVIMD 480 KELEETVNKK MVVASDERFH KDESQKFASS LFKDSSKAES SWIARTVEAQ QKGKGVSVSW 540 DHTKEEPREE FKVKSQWGRT QDDTYHKQAF PAFGQFQQNS GPKSSIEAGT DSSSAGRHSL 600 GSIKFGDKRR TKTEKTISLE VLRQHFAGSL KDAAKSIGGR RLFTTIGNTI FFFHCLIQVN 660 ITH*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MDDGNGPNFI PDSAFENFSG SSMDLDFMDD LLYEGCWLET ADEFNFLQAG TISSSDLNDP  60
RQYFPLFEPN SSNSNVNSHQ ENYQGVDELG GIGSQNQNIR SLDQSGSFPV ESNELGRRLW  120
IAPTATGPSS PVRDRLMHAI GQVKECTKDR DVLIQIWVPV KKEGKNVLTT IGQPYLLDRK  180
CQSLASYRNV SKDFQFPADE DSKELVGLPG RVFLRELPEW TPDVRFFSGV EYLRKNHAKQ  240
FNIRGSLAVP VFEQGSRTCL GVIEVVTTTR DISYRPDLEN VCKALEAVDL RSPQDFCPPS  300
LKVCKEVCQA AAPEISKILE SVCKAHRLPL ALAWAPCFRE GKGGCRHFDE SYSYFISLVN  360
SAYFVAERDD WGFYMACSEQ YLSFGHGIVG RAFATNKQCL STDVAAFSKT DYPLSHHAKM  420
FGLHAAIAIP LQSSYAGSAD FVLELFLPKD CRNTEEQKQM WDILPITVQQ ACQSWHVIMD  480
KELEETVNKK MVVASDERFH KDESQKFASS LFKDSSKAES SWIARTVEAQ QKGKGVSVSW  540
DHTKEEPREE FKVKSQWGRT QDDTYHKQAF PAFGQFQQNS GPKSSIEAGT DSSSAGRHSL  600
GSIKFGDKRR TKTEKTISLE VLRQHFAGSL KDAAKSIGGR RLFTTIGNTI FFFHCLIQVN  660
ITH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G205500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455016.1	0.0	protein NLP2 isoform X1
Refseq	XP_024455017.1	0.0	protein NLP2 isoform X1
Refseq	XP_024455018.1	0.0	protein NLP2 isoform X1
TrEMBL	U5GKC2	0.0	U5GKC2_POPTR; Uncharacterized protein
STRING	POPTR_0004s21550.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.004G205500.2