PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G196300.3

Common Name

POPTR_0004s20710g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 884aa MW: 99461.9 Da PI: 6.6479

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G196300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4.1e-17	62	134	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs+ +++ ++ k++g + r+fvC +eg ++++ + C+a+l++++++ gkw+vt++++eHnH+ Potri.004G196300.3 62 FYDEYARRLGFSTNVAHFTRPKTDGAMAAREFVCGREGLKRRSAYS--------------CHAMLRIELKSPGKWVVTHFVKEHNHS 134 9************************************9987665..............************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-14	62	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-26	282	374	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.078	560	596	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-10	566	594	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	571	598	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MDVHVIDGEE GMGHRGVAYD GDSEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK 60 TFYDEYARRL GFSTNVAHFT RPKTDGAMAA REFVCGREGL KRRSAYSCHA MLRIELKSPG 120 KWVVTHFVKE HNHSTTSLRK VKYLRPRRHF AGAAKSVAET GQGVGVAPSG VGVVPSGVMY 180 LSMDGNHTPV AETNHGVRNT PPAEPNRVIK TSTTVNYIGR PNNQKRTLGR DAQNLLEYFK 240 KMQAENPGFF YAIQLDDENR MANVFWADAR SRTAYTHFGD AVTFDTNSRV NQYRVPFAPF 300 TGLNHHGQTI LFGCAILLDD SEASFVWLFK TFLTAMYDQQ PASIITNRDR AIQTAVSQVF 360 PDARHCNCKW HVLREGQEKL AHVCNAHPNF QLELYNCINL TETIEEFESS WRDILDKYDL 420 RGHEWLQSLY DARTQWVPVY FRDSFFAVMS PNQGFDGSFF DSYVNQQTTL PMFCRQYERA 480 LDNWFERELE ADFDTICTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE 540 GDAAISTFRV AKFEDDQRAY IVSLNYPEMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL 600 PPHYILKRWT RNAKISTGMD DHGGDLPGQE SLTLRYNNLC REAIKYAEEG AIAAETYNVA 660 MVALREGGKR VAVVKKNVAK VSPPGAGNDD RKTSTSASDT TPLLWPPQDE VTRRFNLNDT 720 STPVQSVADL NLPRMAPVSL QRDDGPPGNM AVLPCLKSMT WVMENRSSTT GNRVAVINLK 780 LQDYGKTPST ELEVKFQLSR VTLEPMLRSM AYISEQLSTP ANRVAVISLK LQDTETSTGE 840 SEVKFQVSRD TLGAMLRSMA YIREQLSNSA EPQAEPPSKK HRK*

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MDVHVIDGEE GMGHRGVAYD GDSEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTNVAHFT RPKTDGAMAA REFVCGREGL KRRSAYSCHA MLRIELKSPG  120
KWVVTHFVKE HNHSTTSLRK VKYLRPRRHF AGAAKSVAET GQGVGVAPSG VGVVPSGVMY  180
LSMDGNHTPV AETNHGVRNT PPAEPNRVIK TSTTVNYIGR PNNQKRTLGR DAQNLLEYFK  240
KMQAENPGFF YAIQLDDENR MANVFWADAR SRTAYTHFGD AVTFDTNSRV NQYRVPFAPF  300
TGLNHHGQTI LFGCAILLDD SEASFVWLFK TFLTAMYDQQ PASIITNRDR AIQTAVSQVF  360
PDARHCNCKW HVLREGQEKL AHVCNAHPNF QLELYNCINL TETIEEFESS WRDILDKYDL  420
RGHEWLQSLY DARTQWVPVY FRDSFFAVMS PNQGFDGSFF DSYVNQQTTL PMFCRQYERA  480
LDNWFERELE ADFDTICTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE  540
GDAAISTFRV AKFEDDQRAY IVSLNYPEMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL  600
PPHYILKRWT RNAKISTGMD DHGGDLPGQE SLTLRYNNLC REAIKYAEEG AIAAETYNVA  660
MVALREGGKR VAVVKKNVAK VSPPGAGNDD RKTSTSASDT TPLLWPPQDE VTRRFNLNDT  720
STPVQSVADL NLPRMAPVSL QRDDGPPGNM AVLPCLKSMT WVMENRSSTT GNRVAVINLK  780
LQDYGKTPST ELEVKFQLSR VTLEPMLRSM AYISEQLSTP ANRVAVISLK LQDTETSTGE  840
SEVKFQVSRD TLGAMLRSMA YIREQLSNSA EPQAEPPSKK HRK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.10531	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G196300.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006384743.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A3N7EYI6	0.0	A0A3N7EYI6_POPTR; Uncharacterized protein
STRING	POPTR_0004s20710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Potri.004G196300.3
Entrez Gene	18098061

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]