PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 334aa MW: 37848.2 Da PI: 8.5873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G183900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	172	191	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Potri.004G183900.1 172 FACSICSKTFNRYNNMQMHM 191 78*****************9 PP
2	zf-C2H2	13.8	0.00017	256	278	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F k + ++H +++ Potri.004G183900.1 256 FMCRKCSKTFAVKGDWRTHEKNC 278 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.34E-5	163	195	No hit	No description
Pfam	PF13912	2.4E-4	172	191	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	172	194	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.45	172	199	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-5	172	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	174	194	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	219	251	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	8.83E-6	242	276	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-5	242	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	53	256	276	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGLCNYHVED KNLCFQAPNF IEWLKPSSSP SPSSSSSSLS NSSVTQQVQL TNPMSVLRLP 60 SLFPQQQHQQ REAMKETIQC LPLLSRFTEK KTLKDGDMEV KESTVGVKEE KEVTVALHIG 120 LPNSGDSEVE TEVLDLKEEI SMKKNFQGYS FNSESRFWIP TPAQILVGPM QFACSICSKT 180 FNRYNNMQMH MWGHGSEFRK GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF 240 RTLQTHYKRK HGAKPFMCRK CSKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI 300 RSFGKGHSPH PSLEGFEEID KECITGSEDE FAH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G183900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305556.1	0.0	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-129	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	B9H1R3	0.0	B9H1R3_POPTR; Uncharacterized protein
STRING	POPTR_0004s19460.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-122	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	Potri.004G183900.1
Entrez Gene	7466819

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]