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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G168100.1 | ||||||||
Common Name | POPTR_0004s17540g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36155.3 Da PI: 6.2477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 4.8e-09 | 44 | 91 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L Potri.004G168100.1 44 IQKADREKLRRDRLNEHFVELGNTLDPD----RPKNDKATILADTIQLLKDL 91 56789********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.83 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-14 | 41 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 42 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-6 | 42 | 95 | No hit | No description |
Pfam | PF00010 | 6.9E-7 | 44 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-7 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDPFTDFNPP PPPPVPRHVP PTRPNPNPKS SEAEIKDSVS ARKIQKADRE KLRRDRLNEH 60 FVELGNTLDP DRPKNDKATI LADTIQLLKD LTSQVDKLKA EYATLSEESL ELTQEKNDLR 120 EEKASLKSDI ENLNIQCQQR LRAPYPWPAM DHSFMMAPPS YPFPMPVPMP PGAIPLHSSI 180 QPYPFFGNQN PAVIHNPCST FVPCMAPNTL VDQQSAQHVS SLSQPASRSH VSGEQDLKNK 240 PSGECKIEKS EGSNDVTTDL ELKTPGSTAD QDLSSGQRKS KKSQRKESSV TERSSSSRCS 300 SSHSVQDSSS NSVVDSTKHD DLDKLE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G168100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU230910 | 1e-107 | CU230910.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384545.1 | 0.0 | transcription factor bHLH121 | ||||
Refseq | XP_024454652.1 | 0.0 | transcription factor bHLH121 | ||||
Refseq | XP_024454653.1 | 0.0 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 4e-93 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | B9H151 | 0.0 | B9H151_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s17540.3 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Representative plant | OGRP3401 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G168100.1 |
Entrez Gene | 7453632 |
Publications ? help Back to Top | |||
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