PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G163700.1
Common NamePOPTR_0004s17060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 318aa    MW: 35614.4 Da    PI: 10.01
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G163700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind341.91.5e-10413171301
           GAGA_bind   1 mdddgsre..rnkg.yye..................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                         m+d g+++  r k  yy+                  ++++l   +++++m+++ erd++irernla++ekk+a+a+rd+a +qr+kalaer
  Potri.004G163700.1   1 MEDGGQHQngRYKIdYYKtahphppwnmmprnqvkeQTNALV--MNKKIMTILIERDDAIRERNLAFAEKKEALAARDEAIQQREKALAER 89 
                         777777666888877998999999999998877743335555..99********************************************* PP

           GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                         +kal+erdn+l+a++++en++  + p + ++ +g+k i +    + ++++ +a +  e++ ++alpi++ + e+ +++++k+++++k    
  Potri.004G163700.1  90 DKALMERDNALAAIQYRENAM--NYPLSGGSQRGSKRIPHPVY-HSSDMS-EALDSGEMHVTNALPISSVPAENAKSRQTKRSKENKAVGL 176
                         *******************85..5678889999*****97766.555555.56778*************9999999999998888888777 PP

           GAGA_bind 162 kkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                         k ak++ k +++s++ +k+  +d ++ k e++s+d++ln +++De+t+ +PvCsCtG++rqCYkWG+GGWqSaCCttt+S yPLP+ +++r
  Potri.004G163700.1 177 KAAKSPWKGNRVSEDLNKQGASDgKKIKVEWDSQDVGLNLINFDETTMTAPVCSCTGVPRQCYKWGSGGWQSACCTTTMSSYPLPQLPNKR 267
                         77777777666666655555555689***************************************************************** PP

           GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          aR++grKmS+++f++lL++LaaeG+dls p+DLkd+WA+HGtn+++ti+
  Potri.004G163700.1 268 RARVGGRKMSGNVFTRLLSRLAAEGHDLSIPLDLKDYWARHGTNRYITIK 317
                         *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.2E-1841317IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-961317IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDGGQHQNG RYKIDYYKTA HPHPPWNMMP RNQVKEQTNA LVMNKKIMTI LIERDDAIRE  60
RNLAFAEKKE ALAARDEAIQ QREKALAERD KALMERDNAL AAIQYRENAM NYPLSGGSQR  120
GSKRIPHPVY HSSDMSEALD SGEMHVTNAL PISSVPAENA KSRQTKRSKE NKAVGLKAAK  180
SPWKGNRVSE DLNKQGASDG KKIKVEWDSQ DVGLNLINFD ETTMTAPVCS CTGVPRQCYK  240
WGSGGWQSAC CTTTMSSYPL PQLPNKRRAR VGGRKMSGNV FTRLLSRLAA EGHDLSIPLD  300
LKDYWARHGT NRYITIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.26020.0catkin| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G163700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1305590.0EU130559.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305467.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024456017.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024456018.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-137BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA8D1930.0A8D193_POPTR; GAGA-motif binding transcriptional activator
STRINGPOPTR_0004s17060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-133basic pentacysteine 4
Publications ? help Back to Top
  1. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]