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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G156000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 51471.8 Da PI: 6.9219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.4e-06 | 277 | 318 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + + Ka +L + ++Y++sLq Potri.004G156000.1 277 QVRREKISERMKYLQDLVPGC----NNITGKAGMLDEIINYVQSLQ 318 67*******************....89******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.487 | 267 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-12 | 277 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-6 | 279 | 322 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 280 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MINKALLSAG GENMLHCTDM TVLDRQRARI KWQQEQQQHQ VQLPQQEISY FSELSRVFQQ 60 AGFHEGGLSE VVTRSVKPDP GFVDNRWHND HVVGFGVGPP YTNGLGFELN YGAISRTSSC 120 PPAVAAAATA TATVRGAESV VSDKISSGVG RESSKKRKFD KVVAEEDSRD KRIKGRAEEG 180 ESNTSEKNNN KSSSSNNNSN KNNNSNKDNS AETSKDNSKV TEVQKPDYIH VRARRGQATD 240 SHSLAERVSW NFNTFFFPLL CRFHLEILPN IFMCVVQVRR EKISERMKYL QDLVPGCNNI 300 TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNID NLFAKEAFPA CSTNFPAIGM 360 SPDMTNAAYL QFNPAQQQLV SCCGLDMGIN PPDMGLRRTT STPVSIPETF LDSSCFTQIQ 420 APPTWDADLP NLYNVAFDQG RQTTFPVQPF SGSVEASNLK MEM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9806 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G156000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146666 | 1e-132 | EF146666.1 Populus trichocarpa clone WS01211_J16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454467.1 | 0.0 | transcription factor bHLH63 | ||||
TrEMBL | A0A2K2AV70 | 0.0 | A0A2K2AV70_POPTR; BHLH family protein | ||||
STRING | POPTR_0004s16330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-57 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G156000.1 |