PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G147200.2
Common NamePOPTR_0004s15430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 403aa    MW: 45621 Da    PI: 9.5964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G147200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-1423114199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+  + ++lk + l++p+kfa+++g+  e s   ++  ++g sW++ l  +k+ +++ + +GW +F +++ +  g  +vF + g s+f 
  Potri.004G147200.2  23 FFKII-TQSTLKDKKLRIPNKFARKFGE--ELSDVAKVVLPNGHSWQIGL--TKSNNSVSFDDGWLQFLEQHSVGYGHLLVFGYRGCSNF- 107
                         77877.556666667***********94..588899999***********..999999*************************9775666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +  +f+k
  Potri.004G147200.2 108 -NALIFDK 114
                         .7777776 PP
2B363.14.6e-203093941199
                         HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++ + +p +f ++h +g++     ++l+ ++gr+W ++l  +k++++ +++++GW+eF ++n+LkegD++vF+l+++++f+l v++fr+
  Potri.004G147200.2 309 YNKCFVAVPAEFSKRHlSGVS---EHIKLQVSDGRQWPLRL--NKTQRArMIISRGWNEFKRENNLKEGDVCVFELIKNKKFSLQVSMFRA 394
                         5678899*********86663...359**************..766666699************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2017117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-2117117IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-1621113No hitNo description
PROSITE profilePS5086312.26622115IPR003340B3 DNA binding domain
SMARTSM010193.6E-1223115IPR003340B3 DNA binding domain
PfamPF023628.5E-1223114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-24294389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22295389IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.157299395IPR003340B3 DNA binding domain
CDDcd100171.77E-19300393No hitNo description
SMARTSM010194.4E-19302395IPR003340B3 DNA binding domain
PfamPF023621.9E-18308394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAPRKEVRPT RSLQADQRPL WHFFKIITQS TLKDKKLRIP NKFARKFGEE LSDVAKVVLP  60
NGHSWQIGLT KSNNSVSFDD GWLQFLEQHS VGYGHLLVFG YRGCSNFNAL IFDKTACEIP  120
YHRCRGGTSG GKINYDEKCS PYDVDVMKDE GTIASIDSQY CCALESGVFD EDAGDSRQRH  180
PSKPPPSENN AQERPCFECS GDKRGKIPVK KELIVMAELD DTDESKRRKL SKKCRLPRPH  240
GSLIDETKVN KGKSKTKFDE TDFSPRCGED TDIIVCGFAK ASEESKKAIH AARMFRPKNP  300
SFMVLLRSYN KCFVAVPAEF SKRHLSGVSE HIKLQVSDGR QWPLRLNKTQ RARMIISRGW  360
NEFKRENNLK EGDVCVFELI KNKKFSLQVS MFRAVDGSGP SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-2828239429142B3 domain-containing transcription factor VRN1
4i1k_B4e-2828239429142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G147200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455012.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A2K2AUV80.0A0A2K2AUV8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15430.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-29related to vernalization1 1