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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G147000.2 | ||||||||
Common Name | POPTR_0004s15410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 341aa MW: 38552.3 Da PI: 9.3686 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.2e-13 | 25 | 111 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ++ l+ + l +pkkf++++g + s tl+ + gr v+l +k g+ ++ kGW eFv+ +++g f+vF ++g+s+f +v++ Potri.004G147000.2 25 MVASILQDKKLKIPKKFVNKYGDE--LSSVATLTVPCGRICLVEL--QKVNGKLWFHKGWHEFVECYSIRVGYFLVFIYEGKSNF--NVHM 109 4455566677***********865..7779***************..999999***************************99999..8888 PP E- CS B3 97 fr 98 f+ Potri.004G147000.2 110 FD 111 76 PP | |||||||
2 | B3 | 62.9 | 5e-20 | 234 | 327 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f +l ps+v + +l +p +fa+++ + + ++ +tl+ ++g++W v++ + k+g+ l++GW eFv +n+L+egD+++F+l++ +e Potri.004G147000.2 234 FRVILRPSYVYRGFLLHIPSSFARTFlNTV-TG--FVTLQVSDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIHAKEI 319 667899*****************9994333.33..599999**********..66666677*************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v vfr Potri.004G147000.2 320 VLKVAVFR 327 89999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-22 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-21 | 17 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.38E-17 | 20 | 111 | No hit | No description |
PROSITE profile | PS50863 | 10.8 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-10 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-10 | 24 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-26 | 226 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-26 | 227 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-23 | 232 | 327 | No hit | No description |
SMART | SM01019 | 1.5E-18 | 234 | 329 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.185 | 234 | 329 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-18 | 234 | 327 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MSQAAVKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SVATLTVPCG 60 RICLVELQKV NGKLWFHKGW HEFVECYSIR VGYFLVFIYE GKSNFNVHMF DLTVSEIKNP 120 CNSLSQLQES SHDNPCLLPN EKDDGLEKLT STEDGAGSVI PGITRKTRGR KRMSENIEDV 180 DKHASPGIQN VKLKSTHVRN TSETLTRRRR AVTPEEKERT IRAAHMFRSD NPFFRVILRP 240 SYVYRGFLLH IPSSFARTFL NTVTGFVTLQ VSDGKQWPVR CSFKDGKAKL GQGWTEFVWE 300 NNLEEGDVCI FELIHAKEIV LKVAVFRVLE DAAPTGQLSN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-47 | 203 | 330 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-47 | 203 | 330 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G147000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454808.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | A0A2K2AUS2 | 0.0 | A0A2K2AUS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-86 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G147000.2 |
Entrez Gene | 18097849 |