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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.004G146900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
B3 |
| Protein Properties |
Length: 466aa MW: 52741.1 Da PI: 8.6585 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G146900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 32.4 | 1.7e-10 | 89 | 180 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
ff++l+ + + +++rl++p +f++++g++ +l + g + ++ l k +++ ++ +GW++Fv+ + g f++F+++g+ f
Potri.004G146900.1 89 FFQKLILPGTIREKRLRIPDNFVKKFGHD--LLGFARLIVPGGHVSRIGL--IKADEKLWFHDGWQQFVERFAIHIGYFLIFQYEGNAIF- 174
788899999999**************988..44479**************..9*******************************998888. PP
.EEEEE- CS
B3 92 lvvkvfr 98
+v++f+
Potri.004G146900.1 175 -NVHIFN 180
.888875 PP
|
| 2 | B3 | 58.9 | 9e-19 | 364 | 454 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp fae++ g s ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD++vF+l ++++ l
Potri.004G146900.1 364 VLRPSYLYRGCIMYLPSGFAEKNlnG----LSGFMKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLKSRDVVL 448
78899******************643....34469999***********666665..5699*********************999888889 PP
EEEEE- CS
B3 93 vvkvfr 98
+v+vfr
Potri.004G146900.1 449 KVTVFR 454
999998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MEYEGKATSH DTHLPSVGKC TLGSCQSTHC CCHSTNTQCC VRKGADLKSK KLIFQSDLYH 60
YVNCLPHSLP HSIPVLPYPK SQIKMPRPFF QKLILPGTIR EKRLRIPDNF VKKFGHDLLG 120
FARLIVPGGH VSRIGLIKAD EKLWFHDGWQ QFVERFAIHI GYFLIFQYEG NAIFNVHIFN 180
LPTSEINYHS NSLSGKIYLA FEELEDDDSA ASSGIPTTQL IVNKSYNPPA LQNLLSGSKL 240
NNCLNWGGEE NMHLTKSANV SQVANESARN VFAQYNEHKN SQEEVKLYSP DGETPKLKKR 300
GRKRLKVDPN EQQLSSPNED DGEMSFRFYE SASARKRTVT AEERERAMNA AKAYAPDNPY 360
CRVVLRPSYL YRGCIMYLPS GFAEKNLNGL SGFMKLQLPD GKQWPVRCLY RGGRAKFSQG 420
WYEFTLENNL GEGDVCVFEL LKSRDVVLKV TVFRVLEDGG LMNHP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 5e-75 | 327 | 457 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 5e-75 | 327 | 457 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
