PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.004G144800.1 | ||||||||
Common Name | POPTR_0004s15220g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 421aa MW: 46587.1 Da PI: 7.2687 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 4.9e-32 | 276 | 331 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Potri.004G144800.1 276 KHRRCWSPELHRQFVNALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 331 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 273 | 334 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.648 | 273 | 333 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.78E-18 | 274 | 334 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-26 | 276 | 331 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 278 | 329 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence Send to blast |
MGSVPPELSL DFVRPSSTTK TFTSAIKTFT FLPETITDFL KEVSMIGDAA VKGLKVDSFL 60 NDLEEEKRKI DAFKRELPLC MLLLNDAIQV VREELMQCGT SNNQQPVLEE FIPLKKKIDD 120 HGDDRESDGL IKEKDSKDKK NWMSSVQLWI TDDHHPSTDY LFDAKQSFKL ESKTNKKANQ 180 YVNEDAFQAC KGRTAARTFM PFKAYPGSSR KEDDSNREEL PVPALSLLTP GIKSIKEESN 240 STGSRSSCSR SVSTTAPNSE SNLRNGPQSQ QQSSRKHRRC WSPELHRQFV NALQQLGGAQ 300 VATPKQIREL MQVDGLTNDE VKSHLQKYRL HTRRVPPATA SAPANQSAIV LGGLWMAQDQ 360 YGDSSKANSS KSGSPQGPLQ LAVNTGGTST TGGDSMEDDE DAKSEGYSWK SHIHRSGKDV 420 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.138 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.004G144800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF147597 | 0.0 | EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384452.1 | 0.0 | transcription factor HHO6 | ||||
TrEMBL | B9N4V0 | 0.0 | B9N4V0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-56 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.004G144800.1 |
Entrez Gene | 18097827 |