PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G141200.1
Common NamePOPTR_0004s14840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 269aa    MW: 29855.5 Da    PI: 8.1923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G141200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-20131180255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Potri.004G141200.1 131 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFSTAEEAARAYDKAAIDFRG 180
                         59*******.**********82....48**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-33131188IPR001471AP2/ERF domain
PfamPF008477.1E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22131189IPR016177DNA-binding domain
CDDcd000185.70E-34131188No hitNo description
PROSITE profilePS5103225.238131188IPR001471AP2/ERF domain
SMARTSM003801.4E-37131194IPR001471AP2/ERF domain
PRINTSPR003674.1E-12132143IPR001471AP2/ERF domain
PRINTSPR003674.1E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQRPSKRSKI GEAPAATLFS PPGISPMRLT QDQESAVMVA ALRNVVSGTS STDFSREFNS  60
LNVPITTSYS QFGSRSSNGN GFCISIWPPS SDLDMCAVCK IKGCLGCNFF PPNQEDKKDD  120
KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RRAARVWLGT FSTAEEAARA YDKAAIDFRG  180
PRAKLNFPFP DSGISSFEES KEKQEEQAKQ QEISEKKSGF EAEMGKESEF WDKIGDDEIH  240
EWMMMMLDFS NGDSSDSTGT ESAATIGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-23130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G141200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384411.10.0ethylene-responsive transcription factor ERF109
TrEMBLB9N4Y00.0B9N4Y0_POPTR; ERF family protein
STRINGPOPTR_0004s14840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-38redox responsive transcription factor 1