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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.004G138000.1 |
Common Name | POPTR_0004s14510g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 320aa MW: 35799.1 Da PI: 8.2604 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G138000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv+++k G g+W++ ++ g+ R++k+c++rw +yl
Potri.004G138000.1 14 KGAWTKEEDERLVNYIKAQGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
|
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
Potri.004G138000.1 67 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MGRSPCCEKE HTNKGAWTKE EDERLVNYIK AQGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLFTRG 120 IDPQTHRPLK STTTTTSSST TTTTTTNSTN NKNSKLDTKR STDFQLEEQN YSFLQVQPEF 180 TMSNMTKTEN NSSIIKVGGS SDSAEDSNSS SGVTTELEVY PDHKLVNLEL SIGLPCQSLV 240 SSMNNLKQAK QQEQEEVVTH QLFETSTTPT SSAPVSVHKA ACLCYKLGFK NSQACSSCNA 300 MEKTVTADNL HRFYRPLDA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |