PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G121800.1 | ||||||||
Common Name | POPTR_0004s12120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 504aa MW: 55067.6 Da PI: 5.2634 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.2 | 1e-39 | 138 | 198 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Potri.004G121800.1 138 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 198 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 135 | 195 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-32 | 140 | 196 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.975 | 142 | 196 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 144 | 180 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MLEPKDPAIK LFGKTIQVTE ISSTTTTDND DSQDQDRPSC ASSSLYDADS DNNKRYHGEE 60 DIEADDKDSV EKSLTEKQED GVSPVATEEP SNPDATSGTS ENPKTPSIEK ESEGLQTSRT 120 EEEDSDTSNS PEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG 180 TMRNVPVGAG RRKNKNSASH YRHITIPEAL QNVRADVPNG VYHPSMKTNG TVLTFGSDTP 240 LHESMASVLN LADKTTRNCT RNGSHKPDAV RIPVSYGSGE NSDDHSNGSS VTVSNSIDEA 300 GKSMSKESAM QNCQGFPPEI PCFPGVPWPY PWNSAQWSSP LPPPAFCPPG FPMPFYPAAA 360 YWGCTVPGAW NIPWLPQPSS PKQTSSSSGP NSPTLGKHSR DENMLKSSNS EEGESAKENN 420 TERCLWIPKT LRIVDPGEAA KSSIWTTLGI KNDKPDLIGG RGLFKAFDSK VEKNHEAETS 480 PVLQANPAAL SRSLKFQESS YFG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.7617 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G121800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306032.2 | 0.0 | cyclic dof factor 3 | ||||
TrEMBL | A0A2K2ATH1 | 0.0 | A0A2K2ATH1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s12120.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 2e-94 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G121800.1 |
Entrez Gene | 7463038 |