 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.004G115400.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MIKC_MADS |
Protein Properties |
Length: 256aa MW: 29538.6 Da PI: 7.6672 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G115400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.5 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
Potri.004G115400.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTRGKLFEYST 59
79***********************************************96 PP
|
2 | K-box | 94.1 | 2.3e-31 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
++ + + ++++es++ e+ kL +++e Lqr++R++ G++L++LslkeLq Leqq++++lk+iRs+Kn+l++e+++el+kkekelqe+n+ L
Potri.004G115400.1 78 QQLVPNGSEHQESWSLEHPKLMARVEILQRNLRNYAGQELDPLSLKELQYLEQQIDTALKRIRSRKNQLIHESLNELRKKEKELQEQNNIL 168
5666678999********************************************************************************* PP
K-box 95 rkklee 100
++++e
Potri.004G115400.1 169 AEQVKE 174
**9986 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.56E-41 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.0E-26 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.306 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST RGKLFEYSTD 60 SSMESILERY ERCSYLEQQL VPNGSEHQES WSLEHPKLMA RVEILQRNLR NYAGQELDPL 120 SLKELQYLEQ QIDTALKRIR SRKNQLIHES LNELRKKEKE LQEQNNILAE QVKENEKSLT 180 EQAQWEQRNL GQNSSSFMPP VVQPPLQPPM PPHAPLTIGD SFQIIGFLNG NENVEVQTPP 240 STMPSWMLRH VNDTI*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC208377 | 3e-98 | AC208377.1 Populus trichocarpa clone JGIACSB249-L10, complete sequence. |