 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.004G100100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
LBD |
| Protein Properties |
Length: 298aa MW: 31932.3 Da PI: 7.6774 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G100100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98.6 | 6.1e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
Potri.004G100100.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWP 94
6****************************************************************************************** PP
DUF260 87 leqlkaelallke 99
l+q+++e++l+++
Potri.004G100100.1 95 LCQAAVEAVLRGA 107
*******998765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLRGASIT QINSETAANA 120
QGPPLKAYDI RHVSKDENSA ASNDANRVRT RCRVRRVVKP KASKPACGGN GLGSIVVDMS 180
ATRDGLTRST SHESSVSHQS ELAMVDGESK ETDESMMSVE TAEDSLLFRS EPESKSDLAT 240
HDAASNEIAG LGLDLALGLE PVSRAHHVVP VKKRRIEALG SGDIDTCKME LGLDYAA*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
