PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G099400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 277aa    MW: 31156.3 Da    PI: 8.727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G099400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-10168215455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+++Er RR++iN+++  L++++P +    +k +  a +Le+ ++Y++sLq
  Potri.004G099400.1 168 SHSIAERIRREKINNKLRCLQDIVPGC----HKSMGMAVMLEEIINYVHSLQ 215
                         8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.57E-10162219No hitNo description
SuperFamilySSF474591.06E-16162230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16164226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-9170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAEFAEYLQR LGASQPLTEM MDMNMEMLKH LPELNPSILE NFSITHDFSA DSFFAHQQPE  60
FPATYNHNKL SSTSHPHILS TAPLVHSVSL NQNVFHERKK PKAMEQSTGS SKNVSPTASI  120
NITEKKNILT PSLCAKRRGK KGKNKEKEGD KSKEVIHVRA KRGQATDSHS IAERIRREKI  180
NNKLRCLQDI VPGCHKSMGM AVMLEEIINY VHSLQNQVEF LSMELAAASC SNDLKNLTES  240
SKKAQGTNST DDAQETQKWS RERYGEITCF HSTWSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G099400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454935.10.0transcription factor BEE 1
TrEMBLA0A2K2ASF70.0A0A2K2ASF7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09850.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.17e-45BR enhanced expression 1