PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G095100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 334aa    MW: 37071.3 Da    PI: 8.4067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G095100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482e-15258283126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tGtC+yG+ C+FaHg
  Potri.004G095100.1 258 WKTELCNKWQETGTCPYGNHCQFAHG 283
                         8************************8 PP
2zf-CCCH231.4e-07296321126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++G C+yG rC+F H+
  Potri.004G095100.1 296 YKTQACRMVLAGGVCPYGHRCHFRHS 321
                         9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18254290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-11254289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234257285IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9257284IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-12258283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-12291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9291325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272295323IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5295322IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5296321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKTESPPSD SKTAAQSPPF DCHQANDHDQ FASNFTSLYH SIFPPKPSQL PNSLSFTPST  60
TASPSSSSAA DEISTENRLR QARLILEYQD LCDHYNLSLA RLQTLTNELE LIRRENADLR  120
VTNSELVKLI SLSSEAAVMQ HQNRTFGNNR DVAFERRNNA NNVERERVTL PKSISVRSSG  180
FVKVNQAVSG NVSNNGGGRG SASSNSTWSR VASQHDQLVS GSIVQMQQRV YVPGGGKKRS  240
EEEIAAGMEL EVFNQGMWKT ELCNKWQETG TCPYGNHCQF AHGIGELRPV IRHPRYKTQA  300
CRMVLAGGVC PYGHRCHFRH SLTDQERLLL GPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22258321467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G095100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090410.0AC209041.1 Populus trichocarpa clone POP051-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454734.10.0zinc finger CCCH domain-containing protein 14 isoform X3
TrEMBLA0A2K2AS840.0A0A2K2AS84_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-69C3H family protein