PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G089800.1
Common NamePOPTR_0004s08890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 608aa    MW: 65875.3 Da    PI: 4.7109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G089800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.42.8e-1382365991374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++Ll+cAea+++++l+la+al++++  la+++  +m+++a+yf+eALa+r+++  ++ y    + ++s    s++l +   f+e++P+l
  Potri.004G089800.1 236 LVHTLLACAEAIQQENLKLADALVKHIGLLAASQTGAMRKVATYFAEALARRIYKIFPQDY----CLDSS---CSDTLEM--HFYETCPYL 317
                         689****************************************************444333....44444...5556555..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v
  Potri.004G089800.1 318 KFAHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFV 408
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         a++l+dl+ e+L + p   Ea+aVn+v++lhrll +++ +++    vL+ +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsl
  Potri.004G089800.1 409 ANSLADLDAEMLGLLPpeVEAVAVNSVFELHRLLGRPGGIDK----VLESIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSL 495
                         **************998899**************88888888....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e +  +  +++ ++++ +lgr+i+nvvacega+r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lg
  Potri.004G089800.1 496 EGSGLTPPSQDLVMSELYLGRHICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLG 586
                         877666668999999**************************************************************************** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  Potri.004G089800.1 587 WHTRPLIATSAWQ 599
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.3E-3643108IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.3E-3643114No hitNo description
PROSITE profilePS5098568.637210578IPR005202Transcription factor GRAS
PfamPF035149.8E-136236599IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MKRDHQETIG GGIGNRAESS SSSMETGKGK SWVEDDQDAG GMDELLAVLG YKIKSSDMAD  60
VAQKLEQLEM VLGSEDGISH LASDTVHYNP SDLSGWVQSM LSEFNNLPST DLDSSILLSN  120
NRDSLLGQPS TITPLDFPSN SQSKVFADDS EYDLRAIPGV AAYPQQELDK SNDRKRMKLT  180
PIGSNIAPAP SVNSLQSPTA SSTSSSSPQA MAVSGTLSEP TRPVVLVDSQ ETGVRLVHTL  240
LACAEAIQQE NLKLADALVK HIGLLAASQT GAMRKVATYF AEALARRIYK IFPQDYCLDS  300
SCSDTLEMHF YETCPYLKFA HFTANQAILE AFANASRVHV IDFGLKQGMQ WPALMQALAL  360
RPGGPPAFRL TGIGPPQPDN TDALQQVGWK LAQLAQTIGV EFEFRGFVAN SLADLDAEML  420
GLLPPEVEAV AVNSVFELHR LLGRPGGIDK VLESIKAMRP KIVTIVEQEA NHNGPVFLDR  480
FTEALHYYSS LFDSLEGSGL TPPSQDLVMS ELYLGRHICN VVACEGADRV ERHETLAQWR  540
TRFDSAGFDP VHLGSNAFKQ ASMLLALFAG GDGYRVEENN GCLMLGWHTR PLIATSAWQL  600
AAGDSQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-672205982377Protein SCARECROW
5b3h_D7e-672205982377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.161670.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G089800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305198.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLU5GFQ30.0U5GFQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Representative plantOGRP12511550
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein