PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G088100.1
Common NamePOPTR_0004s08650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 246aa    MW: 27139.6 Da    PI: 9.3122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G088100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+t+Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
  Potri.004G088100.1 13 KGAWSTQEDQKLIDYIQTHGEGCWRSLPEAAGLHRCGKSCRLRWINYL 60
                        79********************************************97 PP
2Myb_DNA-binding52.71e-1666111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.004G088100.1  66 RGNFGQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSHL 111
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23462IPR009057Homeodomain-like
PROSITE profilePS5129415.475860IPR017930Myb domain
SuperFamilySSF466892.26E-2811107IPR009057Homeodomain-like
SMARTSM007171.7E-131262IPR001005SANT/Myb domain
PfamPF002492.5E-151360IPR001005SANT/Myb domain
CDDcd001671.78E-101560No hitNo description
PROSITE profilePS5129425.8761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-2663116IPR009057Homeodomain-like
SMARTSM007176.2E-1665113IPR001005SANT/Myb domain
PfamPF002492.3E-1566111IPR001005SANT/Myb domain
CDDcd001671.49E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRKPCCDKQG NNKGAWSTQE DQKLIDYIQT HGEGCWRSLP EAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI  120
DPNNHRLNQI LPRLQAEPAA PVIAISTTTG SKNNVAASKP KNLSNGDSDR VSDTATCLED  180
EYESLVTQQA ATSGSSSINI DLNIAAPASP GHRTTFGNKQ QNCKLGKTSQ VERDPSSLPT  240
LLLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G088100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233920.0KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305872.10.0transcription repressor MYB6
SwissprotQ388515e-74MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9H3970.0B9H397_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-76myb domain protein 6