PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G074300.3 | ||||||||
Common Name | POPTR_0004s07270g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 486aa MW: 53577.8 Da PI: 6.5224 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Potri.004G074300.3 58 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 102 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 52 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.476 | 53 | 107 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.7E-17 | 56 | 105 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-13 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 58 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-10 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MAIQCGGTRL NLVLPAGNGI SLSAPLNNAS GQQLKEQFSC GSDYSPKARK PYTITKQRER 60 WTEEEHKKFL EALKLYGRAW RRIEEHVGTK TAVQIRSHAQ KFFSKVVRES GGSNTSSVEP 120 IEIPPPRPKR KPMHPYPRKL AHPLEKELLI PEKSLRSSSP NFSISEQENQ SPTSVLSAVG 180 SDALGSTDSD TPNHSLSPVS FAGGVHHADS SPEEDGSPSP ATASSVPDEQ FPKVEKLDSS 240 PEENVSSDEP VVEETSTRSL KLFGRTVLVT EWHKPSSPNM GTSKLSTPDA AEEKLVRPLT 300 LNNVAAEFPF RNGESTWSPL PHGSHGALCY KKFQKENSSP AQNDSAPLPW WTLYGAMPFP 360 CIPFHKKEPA IENLDSKGDE VQDKEIPKEV SWTGSNSGLV SEGENVDKNM DAETESQQFS 420 YEEKELSPIF ELKLTRKSAS SGSKVINEKC PKGFVPYKKR IAERDSQSST ITGEEREEQR 480 IRLCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.350 | 0.0 | bud| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G074300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455555.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
TrEMBL | A0A2K2AR85 | 0.0 | A0A2K2AR85_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s07270.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-67 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G074300.3 |
Entrez Gene | 7494524 |