PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G073300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 354aa    MW: 38667.5 Da    PI: 9.9464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G073300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-1298142147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Potri.004G073300.1  98 RESWSEPEHDKFLEALQLFDRD-WKKIGAFIG-SKTIIQIRSHAQKY 142
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1592148IPR009057Homeodomain-like
PROSITE profilePS5129414.13293147IPR017930Myb domain
TIGRFAMsTIGR015578.1E-1796145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-596148IPR009057Homeodomain-like
SMARTSM007174.4E-997145IPR001005SANT/Myb domain
PfamPF002491.3E-998142IPR001005SANT/Myb domain
CDDcd001675.80E-7100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MHHPIISSTS LSLYKTHRFK THKKTHQNQK PISSASMVSK NPNPADGSYL DPTGMAALPG  60
LSPFPTTTTP PTTTTTSSST SEDPNKKIRK PYTITKSRES WSEPEHDKFL EALQLFDRDW  120
KKIGAFIGSK TIIQIRSHAQ KYFLKVQKSG TNEHLPPPRP KRKAAHPYPQ KASKNAIVLS  180
QPSEAFQSSS APLEPGYVLR PDSSSIPMNP IASAAVASSW TNNVPTVSLS NQTKGPVAAN  240
NCCSSTESTP RTKPIGKTAE QGNHGHSMRV LPDFSQVYGF IGSVFDPNVT DQLQNLKKMD  300
PIDVETVLLL MRNLSLNLTS PSFEEHRTLL SSHEIDSETI GANNNADQSM NVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.165070.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G073300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305938.20.0protein REVEILLE 6
SwissprotQ8H0W31e-125RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3N7EYR60.0A0A3N7EYR6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-101MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]