 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.004G070500.2 |
| Common Name | POPTR_0004s07000g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 460aa MW: 53203.1 Da PI: 7.1715 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G070500.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 172 | 4.8e-53 | 8 | 313 | 4 | 319 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
L++cA+a+++gdl+ a++l + ++ l++ + + +++++ yf+eALa+r+++ ++ +p + + + k+ +e sP+ f
Potri.004G070500.2 8 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVDYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWF 88
79*************************55555399******************.....33333333.....334445566779******** PP
GRAS 94 shltaNqaIleavege.ervHiiDfd.isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
+ + + aI + ++ + +++H i ++ + + Q +L + L +g p s++ T + ++ s++ + l+e ++ ++++A++ v+f++++l
Potri.004G070500.2 89 ACMSTDYAIRDVLNVKkNKLHLIEISsLVDCWQRHSLEEYLLHGHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSPVDFKYRAL 179
*************9886999*****73679***********998877777*********9999**************************** PP
GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
a+++ d+ + Lr+++ +E ++V +v+qlh+ll +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy lf+
Potri.004G070500.2 180 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLNLFE 266
********999998877778***************9....55555666******************************************* PP
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
sle +++ Er+ l+++i+nvva eg +r+erhetl++W++rl
Potri.004G070500.2 267 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIDRIERHETLARWQQRL 313
**998..689999999*99.****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006508 | Biological Process | proteolysis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MGSPLVIKLM DCAKAIADGD LKFADQLFSD MEALSAAETN RVTKKVVDYF AEALARRVHG 60
VHPRNPFPLL PSSNLKKISY EPSPLEWFAC MSTDYAIRDV LNVKKNKLHL IEISSLVDCW 120
QRHSLEEYLL HGHHGMPLSF QYTSIRPKLS KNDDYLQENR RMITEVAQRS PVDFKYRALF 180
ADSVPDIVES VLRLERTSED EIIIVRWVFQ LHKLLALEGA VDKVLSKLKD LKPDIMVIVE 240
QEADNNTDDF FYRFASSFKY YLNLFESLEL YATNLSSLIW ERHLRWQICN VVASEGIDRI 300
ERHETLARWQ QRLYAYKIEE NSGFPVLLAA GHPLIFASVW KPANATHSSG DSLNSPPDAH 360
HTEKTTISEW LEKHLLPVLG YRNSQQLKLK QLNIPYQTNR IDCGIFVMKY ADCLAHCDHF 420
PFTQEDMPHF RLRVFLDIYR GRLPVPPSHV RFLRALYNI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EF148337 | 1e-168 | EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA. |
