PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G064300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31400.7 Da    PI: 10.0171
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G064300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.9e-312474151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Potri.004G064300.1 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                        79***********************************************95 PP
2K-box114.87.9e-38921885100
               K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++  ++ea+a+++qqe+akL+++i nLq+++Rh+lGe L+sLs+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++n+ L
  Potri.004G064300.1  92 SNTGsVSEANAQYYQQEAAKLRSQIGNLQNSNRHMLGEALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLL 182
                         344459************************************************************************************* PP

               K-box  95 rkklee 100
                         r+k+ e
  Potri.004G064300.1 183 RAKISE 188
                         ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2631676IPR002100Transcription factor, MADS-box
CDDcd002651.91E-431793No hitNo description
SuperFamilySSF554556.54E-331790IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-321838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003193.1E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-325374IPR002100Transcription factor, MADS-box
PfamPF014861.9E-28100186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.32102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEYQNESLES SPLRKLGRGK VEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNDSVKST IERYKKASAD SSNTGSVSEA NAQYYQQEAA KLRSQIGNLQ  120
NSNRHMLGEA LSSLSVKELK SLEIRLEKGI SRIRSKKNEL LFAEIEYMQK REVDLHNNNQ  180
LLRAKISENE RKRQSMNLMP GGADFEIVQS QPYDSRNYSQ VNGLQPASHY SHQDQMALQL  240
LIISKCSSFS HFHIPWRVPG FPLSAKATCM LKNLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-201688173Myocyte-specific enhancer factor 2B
1tqe_Q7e-201688173Myocyte-specific enhancer factor 2B
1tqe_R7e-201688173Myocyte-specific enhancer factor 2B
1tqe_S7e-201688173Myocyte-specific enhancer factor 2B
6c9l_A7e-201688173Myocyte-specific enhancer factor 2B
6c9l_B7e-201688173Myocyte-specific enhancer factor 2B
6c9l_C7e-201688173Myocyte-specific enhancer factor 2B
6c9l_D7e-201688173Myocyte-specific enhancer factor 2B
6c9l_E7e-201688173Myocyte-specific enhancer factor 2B
6c9l_F7e-201688173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124500.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G064300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7143860.0JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455023.11e-175floral homeotic protein AGAMOUS
RefseqXP_024455024.11e-175floral homeotic protein AGAMOUS
RefseqXP_024455025.11e-175floral homeotic protein AGAMOUS
SwissprotQ408721e-131AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLI0BW921e-173I0BW92_9ROSI; Flowering locus C
TrEMBLO651111e-173O65111_POPTR; AGAMOUS homolog
STRINGEOY278721e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-109MIKC_MADS family protein