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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G051800.1 | ||||||||
Common Name | POPTR_0004s05110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 30784.2 Da PI: 5.003 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g Potri.004G051800.1 119 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 169 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 118 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.15E-29 | 119 | 177 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-23 | 119 | 179 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-37 | 119 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-14 | 119 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.815 | 119 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MTIQSDHRAA SEGILENVWA SYIGEDRGDI GISNSEQEVS KSWQDLPSLD RRDESMEALQ 60 RLPSLGRWIS MGAETWEELL DGIIPEINDT CNDSAENKGP SSLSSKASAV KVEKVTTRHY 120 RGVRRRPWGK YAAEIRDSSR KGARVWLGTF ETAEEAALAY DKAALRIRGP KTYLNFPLET 180 VAKAMCIDCS KNDSNVLSTT NSQGNNTSCT FPGSSDKVSV IHRKRASRDW EVKSESTMME 240 QPGLKRTARV EELYANDVVE FQDLGSDYLD SLLSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-28 | 118 | 178 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G051800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305098.2 | 0.0 | ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | B9H2N0 | 0.0 | B9H2N0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s05110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 3e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G051800.1 |
Entrez Gene | 7470237 |