PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G050900.3 | ||||||||
Common Name | POPTR_0004s05030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | VOZ | ||||||||
Protein Properties | Length: 492aa MW: 54639.1 Da PI: 5.174 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 438.4 | 9e-135 | 208 | 425 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqg.sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg ew+qdycssfh +lalneg+pg++pvlrp+gi+lkdgllfaalsak++gk+vgipecegaatakspw Potri.004G050900.3 208 PPPSAFLGPKCALWDCPRPAQGgLEWCQDYCSSFHHSLALNEGPPGMSPVLRPGGIGLKDGLLFAALSAKAEGKDVGIPECEGAATAKSPW 298 89******************9648******************************************************************* PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdls+leget+rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+a Potri.004G050900.3 299 NAPELFDLSVLEGETLREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINKCDACA 389 ******************************************************************************************* PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrlelk vd+kk+akgk++++s+adlqk++grlta Potri.004G050900.3 390 LYRLELKAVDGKKTAKGKIANESVADLQKQMGRLTA 425 **********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKLE PNDQSMQGGD 120 NVVFQEEYAV NHGQQEHAFP FVDQCKDSPS GVRSLAINNI EGAAQLDYHQ FDLPQSFEQN 180 FYTSFNGTDL GEEDGMHHVS SYLPSMCPPP SAFLGPKCAL WDCPRPAQGG LEWCQDYCSS 240 FHHSLALNEG PPGMSPVLRP GGIGLKDGLL FAALSAKAEG KDVGIPECEG AATAKSPWNA 300 PELFDLSVLE GETLREWLFF DKPRRAFESG NRKQRSLPDY TGRGWHESRK QVMNEFGGLK 360 RSYYMDPQPL NNFEWHLYEY EINKCDACAL YRLELKAVDG KKTAKGKIAN ESVADLQKQM 420 GRLTAEFPPD NKRAVKGRTK VNAKVGVGNV YSGSTQVAPT NEAYDYGPGP HYDDYLVENL 480 EGYYLTQYKK P* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G050900.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305772.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024455709.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024455710.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024455711.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | B9H2N9 | 0.0 | B9H2N9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s05030.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G050900.3 |
Entrez Gene | 7476367 |
Publications ? help Back to Top | |||
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