PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G046300.1 | ||||||||
Common Name | POPTR_0004s04600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 42730 Da PI: 7.5771 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130 | 2.4e-40 | 78 | 232 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Potri.004G046300.1 78 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETVEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSIPsql 168 789******************************************************************9998888888888877777777 PP TCP 89 .....................................kaaksaakskksqksaasalnlakesr 115 +++ +a+ + k++ +++s l+l+ e+ Potri.004G046300.1 169 rsgsfspnfslqqrsrslfpgigletsqpptflsfqsSNNLNAMMQAKQELRDNSSLELSTETE 232 7777778888887777777777666666666665553222222244444444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-43 | 82 | 251 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.21 | 84 | 138 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEGGDDQLHH YHHKHRPNFP FQLLEKKEDE PCSSSSPYPS LPISTTEPDN DNNSNKTNTN 60 LSTSNLQIVS AEQSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTKELGHKSD 120 GETVEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSIPSQLRS GSFSPNFSLQ 180 QRSRSLFPGI GLETSQPPTF LSFQSSNNLN AMMQAKQELR DNSSLELSTE TEESFNRKRR 240 PEQDLSSSQQ HQMGSYLLQS SSGAVPASHG QIPANFWMLA NSNNNQVMSG DPIWTFPSVN 300 NSGLYRSTMS SGLHFMNFPA PVTLLPSQQL GSTSIGGSSA GNSGMSELGH LNMLAGLNPY 360 RASGISESQA SGSHSHHGGG GGGSDDRHDT TSHHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.6405 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G046300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384036.1 | 0.0 | transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 3e-66 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | U5GE74 | 0.0 | U5GE74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s04600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 | Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 7e-54 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G046300.1 |
Entrez Gene | 18097480 |
Publications ? help Back to Top | |||
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