 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.004G042600.1 |
| Common Name | POPTR_0004s04260g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
HSF |
| Protein Properties |
Length: 210aa MW: 24028.4 Da PI: 9.5015 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G042600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 100.2 | 1.9e-31 | 33 | 133 | 2 | 102 |
HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
HSF_DNA-bind 2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83
Fl+k+y+++e +++ k+++sw+++g+ f+v+ + ef++ Lp++Fkh+nf+SF+RQLn+YgFkk+++++ weFkh
Potri.004G042600.1 33 FLSKTYDLIEeggadgvvdHPHGKRIVSWNADGDGFIVWSPAEFSELTLPRFFKHNNFSSFIRQLNTYGFKKTSSKQ---------WEFKH 114
999******9777777777779***************************************************9988.........***** PP
SXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 84 ksFkkgkkellekikrkks 102
++F +g+++ll +i rkk
Potri.004G042600.1 115 EKFLRGRRHLLVEITRKKC 133
****************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MAANLLQLDP GTTSKNSSSS NIKSPKTKCP APFLSKTYDL IEEGGADGVV DHPHGKRIVS 60
WNADGDGFIV WSPAEFSELT LPRFFKHNNF SSFIRQLNTY GFKKTSSKQW EFKHEKFLRG 120
RRHLLVEITR KKCEPSTFPA YLEASNRESA TLAMEESNRL ILMEENRNLR REKMELEIQI 180
AQFKALEMKL LDCLTQDMGS HQNKTRRLC*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 2e-16 | 27 | 131 | 15 | 120 | Heat shock factor protein 1 |
| 5d5u_B | 3e-16 | 27 | 131 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 3e-16 | 27 | 131 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 3e-16 | 27 | 131 | 24 | 129 | Heat shock factor protein 1 |
| Search in ModeBase |
