PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G036900.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 462aa MW: 51876.1 Da PI: 10.1926 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 9 | 43 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +W t+E++ll av ++G+++W+++a+++ Rt + Potri.004G036900.2 9 KWGTWEELLLGGAVIRHGTRDWNLVASELR-ARTVN 43 8****************************9.99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 2.1E-6 | 8 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00391 | 9 | 43 | No hit | No description |
SMART | SM00297 | 7.7E-16 | 263 | 372 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 9.0E-15 | 274 | 369 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 2.49E-17 | 275 | 372 | IPR001487 | Bromodomain |
Pfam | PF00439 | 8.0E-12 | 278 | 356 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.36 | 283 | 353 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MGTEILINKW GTWEELLLGG AVIRHGTRDW NLVASELRAR TVNCPYTFTP EICKAKYEDL 60 QQRYSGCKAW FEELRKQRMA ELRRALEQSE GSIGSLESKL EILKAERRED CHVSYDSSQT 120 ESPVLFRKCD GIESSSKETS KDGLSAGSFT QDTKTNWTPE CRVATAMPAA EMEIKPEVSI 180 SPEENKVSSI WKLSESIFAG QVSSLKRRRG KRKRKDCSKD VKEGSVGESE FLGSADALFA 240 TRCKDNSTST SGQIARCSTV DDQSRGSSKD GAVDVRVIFD SIAENKCASV FHRRLDSQKR 300 GRYKKMILQH MDIDTIRSRI ASGSITTAKE IFRDLLLLAN NALVFYSKTT REYKSALLLR 360 DIVTKSLQQN LKNYITKTTI TFLSTTSPLL NPPVKPQSAR PGNGKLSGKV TKAGKLVAKT 420 PNTGKRPNNL SFLSFSRIFS HEKERLWPSK KNWTRKYYTT L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 211 | LKRRRGKR |
2 | 206 | 212 | RRRGKRK |
3 | 207 | 215 | RRGKRKRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G036900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455997.1 | 0.0 | uncharacterized protein LOC7490802 isoform X1 | ||||
TrEMBL | A0A2K2APF9 | 0.0 | A0A2K2APF9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s03710.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 2e-34 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G036900.2 |