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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G026600.1 | ||||||||
Common Name | POPTR_0004s02570g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28976.2 Da PI: 8.4688 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+ +++++G ++W ++ g+ R++k+c++rw +yl Potri.004G026600.1 25 RGAWSPEEDQKLIAYINRHGIRNWIEMPKAAGLLRSGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE e +++++ lG++ W++Ia++++ gRt++++k++w++ Potri.004G026600.1 78 RGNFSMEEVETILKLHGILGNR-WSAIAAKLP-GRTDNEIKNFWNT 121 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.769 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-28 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-10 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 22.667 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-13 | 78 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-9 | 80 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 80 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFTCIKLAT MRKIAHNSQN LPLKRGAWSP EEDQKLIAYI NRHGIRNWIE MPKAAGLLRS 60 GKSCRLRWMN YLRPDIKRGN FSMEEVETIL KLHGILGNRW SAIAAKLPGR TDNEIKNFWN 120 TRLKKNYVKN NINTAAQAPK LQGTQTSTAE FKKRKLSENI DVPLPTAPKI LKPEDSEGSP 180 KLPISYFSSS FNLVNDLIIN ENQIIEENVG LLESNGEQCL WGPQFSTEGQ TCMVEDYGDT 240 CTIEMWVQEL LHEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 23 | 125 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G026600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305620.3 | 0.0 | transcription factor MYB14 | ||||
TrEMBL | A0A2K2ANY4 | 0.0 | A0A2K2ANY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s02570.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15840 | 4 | 11 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 5e-55 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G026600.1 |
Entrez Gene | 7458581 |