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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.004G020400.1 |
Common Name | POPTR_0004s01980g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HD-ZIP |
Protein Properties |
Length: 726aa MW: 79870.5 Da PI: 5.5615 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G020400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++ +e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k
Potri.004G020400.1 58 KKRYHRHTQRQIQDMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
688999***********************************************998 PP
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2 | START | 212.9 | 1.2e-66 | 247 | 466 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79
e+a +a++el++ a+a+ep+W + e++n++e+l++f+++ + ++ea+r+s+vv+m++++lve+l+d + qW++ + +a
Potri.004G020400.1 247 EIAVAAMEELMRIAQAGEPLWIQGEnntEMLNEEEYLRTFTRGIGpkplgMRSEASRESAVVIMNHVNLVEILMDAN-QWSTIFCgivsRA 336
57899*************************************999********************************.******99999** PP
EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
+tlev+s+g galq+m+ae+q++sp+vp R+ +fvRy++q+++g+w++vdvS+ds ++ + +++++pSg+li++++ng+sk
Potri.004G020400.1 337 MTLEVLSTGvagnynGALQVMTAEFQVPSPIVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPSL----LSKCRRRPSGCLIQELPNGYSK 423
**************************************************************965....688899**************** PP
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
v+wveh+++++r++++++r+lv+sgla+gak+wv tl+rqce+
Potri.004G020400.1 424 VVWVEHIEVDDRSVQNIYRPLVNSGLAFGAKRWVGTLDRQCER 466
*****************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0009913 | Biological Process | epidermal cell differentiation |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0048825 | Biological Process | cotyledon development |
GO:0005634 | Cellular Component | nucleus |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 726 aa
Download sequence Send
to blast |
MFQANMFEGH HMFDMASKSS ENDSSKLKDD DYETKSGTET MEAQSGDDQD PSEQHPKKKR 60 YHRHTQRQIQ DMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKAQHERSE 120 NSILKAENER LRVENNRYKE ALRNASCPNC GGPAALGEMS FDEQHLRIEN VRLREEIDRI 180 SGIAAKYVGK PLSSLSNLSP HLPSRSLDLG VSNFGAQSGF VGEMFGATDL LRSVTGPTEA 240 DKSMIVEIAV AAMEELMRIA QAGEPLWIQG ENNTEMLNEE EYLRTFTRGI GPKPLGMRSE 300 ASRESAVVIM NHVNLVEILM DANQWSTIFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPIVPT RENYFVRYCK QHTDGTWAVV DVSLDSLRPS LLSKCRRRPS GCLIQELPNG 420 YSKVVWVEHI EVDDRSVQNI YRPLVNSGLA FGAKRWVGTL DRQCERLASS MAINIPSGDL 480 CVITTAEGRK SMLKLAERMV MSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP 540 PGIVLSAATS FWIPVQSKRM FDFLRDENHR SEWDILSNGG EVQEMAHIAN GRDPGNCVSL 600 LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDISAMNI VLSGGDPDYV ALLPSGFAIL 660 PDGPGYGSAG ILDVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV 720 MCDNA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU278766 | 1e-100 | GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence. |