PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G011000.1 | ||||||||
Common Name | POPTR_0004s01140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13942.8 Da PI: 9.3556 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 1e-11 | 6 | 95 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 kvl++sd+ ++ rl +p + + ++ +g+ +s++ + d+ + W++k+++r+ ++ +l + W ++v+++gLk gD v+F++d+++++ Potri.004G011000.1 6 KVLSNSDTANK-RLEFPVRSLPAFpmpDGQ--NSMEFVAFDRLQKPWKFKVSIRNEGRYpkPWLNGEWDDYVHQKGLKKGDKVIFTMDDQENG 95 78877777766.6********999976544..78999**************99888877889************************9876554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.938 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-13 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-11 | 6 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.24E-13 | 6 | 91 | No hit | No description |
Pfam | PF02362 | 8.9E-9 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEAMNKVLSN SDTANKRLEF PVRSLPAFPM PDGQNSMEFV AFDRLQKPWK FKVSIRNEGR 60 YPKPWLNGEW DDYVHQKGLK KGDKVIFTMD DQENGDRIYY IRAERKLFGF WYSIDQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G011000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149486 | 0.0 | AC149486.1 Populus trichocarpa clone Pop1-8L22, complete sequence. | |||
GenBank | AC149543 | 0.0 | AC149543.1 Populus trichocarpa clone Pop1-47M20, complete sequence. | |||
GenBank | AC149575 | 0.0 | AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048022.1 | 5e-64 | PREDICTED: uncharacterized protein LOC105142200 | ||||
TrEMBL | B9NBH4 | 6e-82 | B9NBH4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s01140.1 | 1e-82 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15317 | 3 | 7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G011000.1 |
Entrez Gene | 18097374 |