PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 370aa MW: 41189.3 Da PI: 6.6094

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G004700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	296	331	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ Potri.004G004700.1 296 HKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 331 4569*****************************885 PP
2	ELK	38.4	2.7e-13	251	272	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLk+EF+ Potri.004G004700.1 251 ELKGQLLRKYSGYLGSLKKEFM 272 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	4.6E-19	115	159	IPR005540	KNOX1
Pfam	PF03790	5.9E-21	117	155	IPR005540	KNOX1
SMART	SM01256	9.2E-25	164	215	IPR005541	KNOX2
Pfam	PF03791	1.4E-20	168	214	IPR005541	KNOX2
Pfam	PF03789	2.4E-10	251	272	IPR005539	ELK domain
PROSITE profile	PS51213	11.034	251	271	IPR005539	ELK domain
SMART	SM01188	6.0E-8	251	272	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	271	334	IPR001356	Homeobox domain
SMART	SM00389	7.6E-14	273	338	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-19	273	348	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-28	276	336	IPR009057	Homeodomain-like
CDD	cd00086	1.08E-12	283	335	No hit	No description
Pfam	PF05920	2.5E-16	291	330	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	309	332	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEGGGAGCSS TPSLMMAFGD SSNGLCPMMM MPLMSSSSSA HQHHHQQQHV NAGDSSISNT 60 LFLPLPPTNY QSQNRINNSA SGSSMILDDH NHNNNTVTAT GCYFMENNDG GSSSTSVKAK 120 IMAHPHYHRL LAAYANCQKV GAPPEVVARL EEACASAASM GPANTDGIGE DPALDQFMEA 180 YCEMLTKYEQ ELSKPLKEAM VFLQRVECQF RALTLSSPNS AWGEGNDRNA SSEEELDVNN 240 KFIDPQAEDQ ELKGQLLRKY SGYLGSLKKE FMKKRKKGKL PKEARQQLLD WWSRHHKWPY 300 PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAGHPHY YMDNVLGNPF 360 PMDISHTLL*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEGGGAGCSS TPSLMMAFGD SSNGLCPMMM MPLMSSSSSA HQHHHQQQHV NAGDSSISNT  60
LFLPLPPTNY QSQNRINNSA SGSSMILDDH NHNNNTVTAT GCYFMENNDG GSSSTSVKAK  120
IMAHPHYHRL LAAYANCQKV GAPPEVVARL EEACASAASM GPANTDGIGE DPALDQFMEA  180
YCEMLTKYEQ ELSKPLKEAM VFLQRVECQF RALTLSSPNS AWGEGNDRNA SSEEELDVNN  240
KFIDPQAEDQ ELKGQLLRKY SGYLGSLKKE FMKKRKKGKL PKEARQQLLD WWSRHHKWPY  300
PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAGHPHY YMDNVLGNPF  360
PMDISHTLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	275	LKKEFMKKRK
2	272	276	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3282	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G004700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY684937	0.0	AY684937.1 Populus balsamifera subsp. trichocarpa x Populus deltoides homeobox transcription factor KN2 (Kn2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304900.2	0.0	homeobox protein SBH1
Swissprot	P46608	1e-156	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	B9N8F4	0.0	B9N8F4_POPTR; Uncharacterized protein
STRING	XP_002518420.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-134	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Potri.004G004700.1
Entrez Gene	7463625

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]