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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G207100.1 | ||||||||
Common Name | POPTR_0003s22300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 750aa MW: 86587.8 Da PI: 7.2324 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.5 | 3.9e-27 | 28 | 114 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnHel p Potri.003G207100.1 28 SFYKDYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIYSFVKEHNHELLP 114 5****************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.3E-25 | 28 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.1E-29 | 227 | 320 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.769 | 507 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.8E-9 | 515 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MDSSVITGST IPEPRDGIEF ESHEAAYSFY KDYAKSVGFG TAKLSSRRSR SSKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYSFVKEHNH ELLPAQVHFF 120 RSHRNDDPLK NDIRIRRRKN LSSVSKLFGA YQNVDCLEGY MRNQQDKGRS LVLESGDAQV 180 LLDLFMHMQE ENPKFFYAVD LNEEHRLRNL FWVDTKGMED YSNFDDVVCF DTTYFTNKYK 240 IPLVFFIGVN HHIQPTLLGC ALIADETVYT FDWLMQTWFM AMGERAPQLM LTDQNNALKA 300 AIGAVFPQTC HCFCLWHILE KIPRQLEYLS LWHDNFMVKF NKCIFKSWTE EQFEKRWSKL 360 LDKFNLREVE WVRSLYEDRK YWVPAFMRDV SFAGLSTMSR SESLTSSYDK YVHAETSMRE 420 FIEQYKTILE DRYEEEAKAD FDAWHETAEL KSPSPFEKQM SLVYTHEIFR KFQVEVLGAA 480 ACHLKKESQD ETTTMYTVKD FEDGQNYVVE WNETKSDIYC SCRSFEYKGY LCRHAIVVLQ 540 MSGVFSIPPK YVLQRWTNAA LSRHPISERL DEVQTKVRRY NDLCRRAIIL GEEGSLSQES 600 YNIALCAIRE ALKQCASLNN SAETSACPNT SGSIEEENQY RNTSKERAPD LQVTGADKAT 660 RRAGAANTKE SNHSGAVKKG KQVTRSGDVN VGGQEGFHLM GISDLGPTQS HNMMPAQLQN 720 AVPTVFHNIM PTQFQNIAST HLHDTRLPR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G207100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216409 | 0.0 | AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453616.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A2K2BA94 | 0.0 | A0A2K2BA94_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JI49 | 0.0 | A0A385JI49_POPTO; FAR1-related sequence 4 | ||||
STRING | POPTR_0003s22300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G207100.1 |
Entrez Gene | 7478337 |
Publications ? help Back to Top | |||
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