PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G192100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 317aa    MW: 34854.5 Da    PI: 5.6774
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G192100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.95.2e-146991897
               NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlha...............eenkrrtlkksdiaaavtrtdifdflvdi 95
                        ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r+   +               ee+kr t  +   + +v++ ++fdfl +i
  Potri.003G192100.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITlqrgaktmsalhlmgEESKR-TTSRILRKHCVQSYNVFDFLREI 97
                        5789**********************************9986665443300000001111111133333.33444455667777777777777 PP

               NF-YC 96 vp 97
                        v 
  Potri.003G192100.1 98 VS 99
                        66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-23267IPR009072Histone-fold
SuperFamilySSF471138.38E-153103IPR009072Histone-fold
PfamPF008081.5E-16867IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT HEITLQRGAK  60
TMSALHLMGE ESKRTTSRIL RKHCVQSYNV FDFLREIVSR VPDYSHGHSD STGDHRPLQK  120
RKPTGDECND SDEELKRSRM HEMSHAGSSG RGRGRGRGRG RGRGARNIER ESSSRDLEPE  180
SCTTVQQSIK NNTNPGVVMD NGSESKESVK ENNRVSDATN QPERNFDLNA EVNDSEDAKA  240
AAAPAAAAPA AAATTTTTTT TTSAPSSSVE PAAETNHEEY PGWSLSEMDK MVIDPLQLAQ  300
LSKRLDEEEE DYDEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-20267570Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152162RGRGRGRGRGR
2154163RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.8370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G192100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304814.11e-171dr1-associated corepressor homolog isoform X2
TrEMBLB9GXA01e-170B9GXA0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19130.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-70nuclear factor Y, subunit C11