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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G172600.4 | ||||||||
Common Name | POPTR_0003s17120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 234aa MW: 25292.1 Da PI: 8.6749 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.6 | 3.4e-23 | 186 | 233 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsr Potri.003G172600.4 186 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVAGLERRFCQQCSR 233 6**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-23 | 179 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.145 | 184 | 233 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-22 | 185 | 233 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-17 | 187 | 233 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLTD LETDGEKGND SGFFYSSGSV 60 SRSRGSISDL ELASFSKSSK SASTNSSSAG EVKTSKFTLG ASKTNPSDYN KEELVKAKAT 120 DTSPTLEASV GSGDQLLGLK LGKRTYFEDA CAGSNAQSSS ISTIPVPSFT PAKKLKSSNH 180 SQRAPRCQVE GCNLDLSSAK DYHRKHRVCE SHSKCPKVIV AGLERRFCQQ CSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 7e-16 | 187 | 233 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2760 | 1e-171 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G172600.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453857.1 | 1e-169 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_024453858.1 | 1e-169 | squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_024453859.1 | 1e-170 | squamosa promoter-binding-like protein 2 isoform X2 | ||||
Swissprot | Q9S840 | 5e-52 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A2K2B8K8 | 1e-170 | A0A2K2B8K8_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2B8L2 | 1e-168 | A0A2K2B8L2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s17120.1 | 1e-168 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-49 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G172600.4 |
Entrez Gene | 7481229 |