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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.003G172600.1 |
Common Name | POPTR_0003s17120g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
SBP |
Protein Properties |
Length: 412aa MW: 45630.6 Da PI: 9.5627 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.003G172600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 130.2 | 7.6e-41 | 186 | 261 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
+CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
Potri.003G172600.1 186 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 261
6*************************************************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048653 | Biological Process | anther development |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLTD LETDGEKGND SGFFYSSGSV 60 SRSRGSISDL ELASFSKSSK SASTNSSSAG EVKTSKFTLG ASKTNPSDYN KEELVKAKAT 120 DTSPTLEASV GSGDQLLGLK LGKRTYFEDA CAGSNAQSSS ISTIPVPSFT PAKKLKSSNH 180 SQRAPRCQVE GCNLDLSSAK DYHRKHRVCE SHSKCPKVIV AGLERRFCQQ CSRFHGLSEF 240 DEKKKSCRRR LSDHNARRRK QPGSVHLNPS RLSSSLYGID ERQQMSHVWD KAPLVHSRPN 300 ANLTWESTST SKFTITKEYI AKPAEIGGSD RRLHLPGIDL TNSIAIQHHH KSNGFLPSKA 360 KGTAEYWRTE QQSNDPQVHT LSSRTDGSNY LQEFQLLRTS NGNDFYSSHM N*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 242 | 259 | KKKSCRRRLSDHNARRRK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |