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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G170600.2 | ||||||||
Common Name | POPTR_0003s16910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CAMTA | ||||||||
Protein Properties | Length: 916aa MW: 102104 Da PI: 6.2299 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.6 | 1.3e-54 | 18 | 132 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e ++rwlk+ e++ iL+n++k+++t+e+ ++p+sgsl+L+n++++r+fr+DG+sw+kkkdg+tv E+he+LKvg+ve+++cyYah+e+np Potri.003G170600.2 18 EEaQTRWLKPAEVLFILQNHDKYQFTKEPLQKPTSGSLFLFNKRILRFFRRDGHSWRKKKDGRTVGEAHERLKVGNVETINCYYAHGEQNP 108 55599************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhyle 116 +fqrr+yw+L+ ++e+ivlvhy+e Potri.003G170600.2 109 NFQRRSYWMLDPAFEHIVLVHYRE 132 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.422 | 13 | 139 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.0E-75 | 16 | 134 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.6E-48 | 19 | 132 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.1E-9 | 349 | 438 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 1.35E-5 | 354 | 438 | No hit | No description |
Pfam | PF01833 | 8.9E-10 | 354 | 437 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 5.04E-19 | 355 | 438 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 1.4E-15 | 550 | 646 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.671 | 552 | 644 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-16 | 554 | 646 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.99E-9 | 572 | 644 | No hit | No description |
Pfam | PF12796 | 1.3E-7 | 573 | 645 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.381 | 585 | 617 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.4E-4 | 585 | 614 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3800 | 624 | 653 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 18 | 702 | 724 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 703 | 732 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.3E-8 | 705 | 808 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.24 | 756 | 778 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.95 | 757 | 786 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.019 | 759 | 777 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 4.8E-5 | 779 | 801 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.956 | 780 | 804 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.6E-5 | 782 | 801 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MGQGLTNPDR YDINSLFEEA QTRWLKPAEV LFILQNHDKY QFTKEPLQKP TSGSLFLFNK 60 RILRFFRRDG HSWRKKKDGR TVGEAHERLK VGNVETINCY YAHGEQNPNF QRRSYWMLDP 120 AFEHIVLVHY REISEGKPSP GSAAQLSPGF SYSPSSNTSQ TQGSSSAISG VYEQHQSLSS 180 PASVEVNSGL DIKDNGVDST AELTSFANNE VTQCLRRLEE QLSLNKDNIK EIGSFGGDEG 240 DTNDSKILEY VNHISKEDQS KNLLRGSQYI VDYQSYGGLS GKQLERNNLA PLQDAASLLP 300 PQEFEGFETP TYSSVIETHE NNADCYAMLY DQGHLGIPIE ADSNLTVAQQ QKFSIREISP 360 EWGYATEATK VIIVGSFLCD PSESSWTCMF GDTEVPLQII QEGVIRCEAP PHQPGKVTLC 420 ITSGNRESCS EIRDFDYRAK DSSCAHCNFS QTEATKSPEE LLLLVRFVQM LLSDFSLQRG 480 DNIETGIHLL QKLKADDDSW GYIIEALLVG SGTSSTTVDW LLQQLLKDKL RQWLSSKSQE 540 EHDHPGCSLS KKEQGIIHML AGLGFEWALS PILSHGVSIN FRDINGWTAL HWAARFGREK 600 MVAALLASGA SAGAVTDPSS KDPIGKTAAS IAASSGHKGL AGYLSEVALT SHLSSLKLKE 660 SELSKGSAEI EAERAVDSIS KESFAANEDQ VSLKDTLAAV RNAAQAAARI QSAFRAHSFR 720 KRQEIEASLL DEYGISAGDI QGLSAMSKLA FRNSQDINSA ALSIQKKYRG WKGRKDFLEL 780 RQKVVKIQAH VRGYRVRKNY KVICWAVGIL DKVVLRWRRK GIGLRGFRNE TESIDEREDD 840 DILKMFRKQK VDGTIDEAFS RVLSMVDSPD ARQQYRRMLQ RYRQAKDELG TSEAAASTSL 900 ADANEMENDD LYRFQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G170600.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453205.1 | 0.0 | calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A2K2B8F5 | 0.0 | A0A2K2B8F5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G170600.2 |
Entrez Gene | 7496566 |
Publications ? help Back to Top | |||
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