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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.003G170200.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 198aa MW: 22715.4 Da PI: 10.2494 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.003G170200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 91.6 | 3.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienks rqvtfskRrng++KKA ELSvLCd++va+++fss +klye+ss
Potri.003G170200.1 9 KRIENKSSRQVTFSKRRNGLFKKARELSVLCDVQVAILVFSSCDKLYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 51.2 | 5.6e-18 | 76 | 171 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
k++++s+++++ae ++ ++a+Lk+ + L R+l G +L+l +L +Le+qL+ l+++R++K +++le+++ l +ek+l+een+
Potri.003G170200.1 76 KKTTSSKDANHAEVYYGKHANLKSLAKLLLMVERNLEGPYAMELTLGDLVELEKQLHVTLTHVRDRKIQMMLESVKSLHDQEKMLKEENQL 166
45566688999999***************************************************************************** PP
K-box 94 Lrkkl 98
L+k++
Potri.003G170200.1 167 LEKQI 171
**998 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 4.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.42E-36 | 2 | 73 | No hit | No description |
| SuperFamily | SSF55455 | 6.8E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.0E-12 | 83 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 9.781 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGRKKVELKR IENKSSRQVT FSKRRNGLFK KARELSVLCD VQVAILVFSS CDKLYEFSSV 60
GSTTNILKRY TSHFKKKTTS SKDANHAEVY YGKHANLKSL AKLLLMVERN LEGPYAMELT 120
LGDLVELEKQ LHVTLTHVRD RKIQMMLESV KSLHDQEKML KEENQLLEKQ IVAMKNGKDS 180
DHPLYHPPQQ TTLSLLK*
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