PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G170000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23034.4 Da    PI: 10.0653
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G170000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.2e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krie k+ rq+tfskRrng++KKA  LS LCd++va+++fss+gklye+ss
  Potri.003G170000.1  9 KRIEKKICRQITFSKRRNGLIKKARDLSLLCDVQVALLVFSSSGKLYEFSS 59
                        79***********************************************96 PP
2K-box48.92.8e-17871751098
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +e  + +++++++   + +++ q+ +R++   + e+L+l +L+q e q++ +l++ R++K+el+le i+ l  kek l+een++L++++
  Potri.003G170000.1  87 AELYHGKYEKKIKSFAELLQTVQSIHRQVGDSNFEELTLSDLEQTEMQVDAALRRTRARKTELMLETINALNDKEKTLREENQRLQTQV 175
                         555667788888888888888889999999999*****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.59161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002655.67E-33273No hitNo description
SuperFamilySSF554552.75E-28279IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.42288181IPR002487Transcription factor, K-box
PfamPF014861.0E-1294175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSLLCD VQVALLVFSS SGKLYEFSSA  60
GSLAKILKRH RSYFEEKTAL SNGANDAELY HGKYEKKIKS FAELLQTVQS IHRQVGDSNF  120
EELTLSDLEQ TEMQVDAALR RTRARKTELM LETINALNDK EKTLREENQR LQTQVVAMNN  180
DNETNGMMSG SFEPLFGLLK Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17182181MEF2 CHIMERA
6byy_B1e-17182181MEF2 CHIMERA
6byy_C1e-17182181MEF2 CHIMERA
6byy_D1e-17182181MEF2 CHIMERA
6bz1_A2e-17182181MEF2 CHIMERA
6bz1_B2e-17182181MEF2 CHIMERA
6bz1_C2e-17182181MEF2 CHIMERA
6bz1_D2e-17182181MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G170000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452185.11e-145MADS-box transcription factor 14 isoform X1
TrEMBLA0A2K2B8F11e-144A0A2K2B8F1_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.17e-42MIKC_MADS family protein