 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.003G167900.1 |
| Common Name | POPTR_0003s16630g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
TCP |
| Protein Properties |
Length: 303aa MW: 32590.2 Da PI: 6.6886 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.003G167900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 114.4 | 1.5e-35 | 58 | 141 | 2 | 84 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84
a+k+++++++h kv+gR+RR+R++a+caar+F+L++eL +++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++
Potri.003G167900.1 58 APKRSSNKDRHKKVEGRGRRIRIPALCAARIFQLTRELEHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGASVSEQGG 141
789******************************************************************988644444444442 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MEPKSPNQYQ PQMPSFLNPP QEASMSENNI NSNNNKPADN EDFQNMMADK DDSKKKLAPK 60
RSSNKDRHKK VEGRGRRIRI PALCAARIFQ LTRELEHKSD GETIQWLLQQ AEPSIIAATG 120
TGTIPASALA AAGASVSEQG GSVSTGLHAK MEGLGPGVTG SRDRNDWTLS NTKLGISNVA 180
TGVWPSVGGI GLGFVPNSGQ STSNFGNENS STLPKYGFQG VEFPNINMGL MSFYSMFSGT 240
NQQLPGLELG LSQDGHSAML NPQALSPFYH QMVQGRGVLD SLNQEKQQEQ PPDKDDSQGS 300
RQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
| Publications
? help Back to Top |
- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
[PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
[PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1697
[PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
Plant J., 2018. 93(1): p. 66-78
[PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
Microbes Environ., 2017. 32(4): p. 314-323
[PMID:29187692]
|
