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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.003G166000.3 |
Common Name | POPTR_0003s16440g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
CO-like |
Protein Properties |
Length: 424aa MW: 47025.6 Da PI: 8.1449 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.003G166000.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.7 | 1.8e-06 | 12 | 43 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
C+ ++e+ + l+C+ ++ lC C ++ H+
Potri.003G166000.3 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHS 43
57**************************9995 PP
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2 | zf-B_box | 20.4 | 1.1e-06 | 54 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
+++C++++++ ++ C +++ lC++C H + H+
Potri.003G166000.3 54 AQICDNCNSELVSVRCATDNLVLCQECDWDAHGScsvsasHD 95
689************************998884466666665 PP
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3 | CCT | 44.3 | 6.2e-16 | 390 | 418 | 16 | 44 |
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44
+++K+irYesRKa+A+sR+RvKGrFvk +
Potri.003G166000.3 390 RYDKHIRYESRKARADSRKRVKGRFVKTT 418
79************************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MVTHNSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC 60 NSELVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRTIIE GFSGCPTALD LASIWGFDLE 120 EKKQEPFQDL MVPNENSNNG NRNVDNVMVF GNVSKSPSCG KYKHVIYKQL VELLKRDLMG 180 GGGGGGEGGG GGEQLLHEQM PFTSLLMLPT EVGVKISRVS NNNRKFLPFQ IWDFHLGQLR 240 SHDESGQLEI EYGANDAGFV IKNFSEPMKE TSLTNTKMLG NIQGPATSES NNLPIARVLS 300 GTAFCKPKCS GSSKDVQFME QSILVRGEGF KTEAATKVDM ELLVRNRGDA MQRYKEKKKT 360 RRYAYLLLLV ISTACLSSNA LCTVKFCINR YDKHIRYESR KARADSRKRV KGRFVKTTEA 420 PDC*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G28050.1 | 1e-105 | B-box type zinc finger protein with CCT domain |