PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G161000.1
Common NamePOPTR_0003s15940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 296aa    MW: 32457.1 Da    PI: 4.613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G161000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-194088355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Potri.003G161000.1 40 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 88
                        67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-303995No hitNo description
SMARTSM003801.3E-3439102IPR001471AP2/ERF domain
PROSITE profilePS5103220.7053996IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-214097IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-294096IPR001471AP2/ERF domain
PRINTSPR003673.9E-84051IPR001471AP2/ERF domain
PfamPF008475.7E-124288IPR001471AP2/ERF domain
PRINTSPR003673.9E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDFTQSTKTN STPSPSKNKR KQQQQQQKNQ NQQEQHEVRF LGVRRRPWGR YAAEIRDPST  60
KERHWLGTFD TAEEAALAYD RAARSMRGSK ARTNFVYSDM PPASSVTSII SPDESQHDIS  120
ALFAPPPQNH AHQNDTNCQK LFFSQDQYPF NAYAYGNSNS NLLTGGEGWV QGCGAGAADG  180
PGGSYEPNNA GSFGVATEPI YFSNKDNIEL PPLPPDVNSS CYGSDMDHGF WNDAGFFGFQ  240
EEQKNNGNGL EISGSSLGFD SNDFGQHGSL FEIMPSVSDT VTDELDLGSS STLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-204095359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G161000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304632.10.0ethylene-responsive transcription factor LEP
TrEMBLB9GYV00.0B9GYV0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.15e-37ERF family protein