PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G155700.1
Common NamePOPTR_0003s15440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 342aa    MW: 38430.4 Da    PI: 7.0197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G155700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-182774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W+++Ede+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Potri.003G155700.1 27 RGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 74
                        788*******************************************97 PP
2Myb_DNA-binding52.11.5e-1680123146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T++E+ ++v+ +++lG++ W+ Ia++++ gRt++++k++w++
  Potri.003G155700.1  80 RGSFTAQEESIIVEIHRMLGNR-WAQIAKHLP-GRTDNEVKNFWNS 123
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-261877IPR009057Homeodomain-like
PROSITE profilePS5129417.8862274IPR017930Myb domain
SuperFamilySSF466893.19E-2925121IPR009057Homeodomain-like
SMARTSM007179.4E-132676IPR001005SANT/Myb domain
PfamPF002497.2E-162774IPR001005SANT/Myb domain
CDDcd001675.13E-113074No hitNo description
PROSITE profilePS5129425.1875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2578130IPR009057Homeodomain-like
SMARTSM007172.3E-1579127IPR001005SANT/Myb domain
PfamPF002494.5E-1580123IPR001005SANT/Myb domain
CDDcd001674.88E-1182122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVSCDDMQEG LGNKTGHQCC SKRKVKRGLW SPDEDEKLIK YITTHGHGSW SSVPKLAGLQ  60
RCGKSCRLRW INYLRPDLKR GSFTAQEESI IVEIHRMLGN RWAQIAKHLP GRTDNEVKNF  120
WNSCIKKKLI AQGLDPKTHN LLSNNYKHNN NNNACELISY QYSHQQTTST FTVDSQINDT  180
SMDMKAPLIP FPTIPPVPDT NPYPPLLHKF SSISTCEYQN PNTLAFLESG SKSSIGSVPV  240
SSSTSHPSEF GMLDETCMWA GGYELIQSIK SEKEQPEQQV ELTIEKTNEL IGAGQNMVAS  300
FETSTFDFDF LESTLLPCGM YYNPSPIVQP AWNSWALQEK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30271297108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G155700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303715.10.0transcription factor MYB86
SwissprotQ8LPH62e-68MYB86_ARATH; Transcription factor MYB86
TrEMBLB9GYG90.0B9GYG9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-79myb domain protein 67