PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G147300.1
Common NamePOPTR_0003s14710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 466aa    MW: 52339.9 Da    PI: 8.0231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G147300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41e-12289334454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+r+N++f  Lr+++P+       K++ a+ L  Av+YIk+L
  Potri.003G147300.1 289 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDRASLLADAVNYIKEL 334
                         799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-4324196IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.53E-18283349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-14284338No hitNo description
PROSITE profilePS5088817.339285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-17289349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEEILSPSSS SSLISFAQET SSTLQQRLQF FLHSRPEWWV YSIFWQASKD ASGRPVLSWG  60
DGHFRGNKKY SSKVSNKQNH PKFGFNIERK SLFNEDMDLE RLVDGDVAEW YYTASVTRVF  120
AVGDGILGRA FTSGSSIWLT GDRELQIFEC ERVTEARMHG IQTFVCVSTP SGVLELGSPV  180
FISEDWSLLQ LAKSIFGAEI NANPVPKQSN HESQPQISNC NVSNLLDIGL FSSPQTERTS  240
SLENKKEVFG QGRSSSDSGR SDSDAGFREN HIGFKKRGRK PGGKESPLNH VEAERQRRER  300
LNHRFYALRS VVPNVSKMDR ASLLADAVNY IKELKRKVNE LEANLQVVSK KSKISSCANI  360
YDNQSTSTST MVNHIRPPPN YMSNNAVEVD VKILGSEGLI RVQSPDINYP AARLMDALRE  420
LEFPVHHLSV TRVKELVLQD VVIRFDDGLV TEEAMRAAIF QRMQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-25231968192Transcription factor MYC3
4rqw_B9e-25231968192Transcription factor MYC3
4rs9_A9e-25231968192Transcription factor MYC3
4yz6_A9e-25231968192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G147300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2835862e-97GU283586.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835872e-97GU283587.1 Populus balsamifera isolate KUU07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835892e-97GU283589.1 Populus balsamifera isolate FBK13 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835912e-97GU283591.1 Populus balsamifera isolate GAL12 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835922e-97GU283592.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835932e-97GU283593.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835942e-97GU283594.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835962e-97GU283596.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835982e-97GU283598.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836012e-97GU283601.1 Populus balsamifera isolate NWL07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankJX9795962e-97JX979596.1 Populus euphratica isolate PeuhE3_1 hypothetical protein (751129) gene, partial cds.
GenBankJX9795982e-97JX979598.1 Populus euphratica isolate PeuhE15_1 hypothetical protein (751129) gene, partial cds.
GenBankJX9796002e-97JX979600.1 Populus euphratica isolate PeuhE27_1 hypothetical protein (751129) gene, partial cds.
GenBankJX9796022e-97JX979602.1 Populus euphratica isolate PeuhE39_1 hypothetical protein (751129) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303693.20.0transcription factor MYC2
TrEMBLB9GY360.0B9GY36_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-64bHLH family protein