PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G146700.1 | ||||||||
Common Name | POPTR_0003s14665g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 74aa MW: 8276.66 Da PI: 8.0613 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 51.4 | 2.5e-16 | 18 | 53 | 3 | 39 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaa 39 rYkeClkNhAa++ g+a+DGCgEf+p +eeg+ + Potri.003G146700.1 18 VERYKECLKNHAATICGKAIDGCGEFIPG-EEEGSLE 53 579*************************9.5555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-9 | 20 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.5E-13 | 20 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-14 | 20 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.159 | 21 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MDIPLQASRR IKRPYKKVER YKECLKNHAA TICGKAIDGC GEFIPGEEEG SLEAPQVLNL 60 ILIHDMILNR NIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G146700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306012.2 | 3e-17 | zinc-finger homeodomain protein 3 | ||||
Refseq | XP_011005585.1 | 4e-17 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
TrEMBL | B9GY33 | 1e-46 | B9GY33_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s14270.1 | 1e-16 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39528 | 2 | 2 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-15 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G146700.1 |
Entrez Gene | 7497520 |