PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G144200.1
Common NamePOPTR_0003s14420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 281aa    MW: 31258.3 Da    PI: 8.8626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G144200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WTt Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Potri.003G144200.1 14 RGPWTTREDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding538e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Potri.003G144200.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                         7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.557961IPR017930Myb domain
SuperFamilySSF466898.07E-3011108IPR009057Homeodomain-like
SMARTSM007173.6E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-231568IPR009057Homeodomain-like
CDDcd001679.70E-101661No hitNo description
PROSITE profilePS5129426.58162116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2669116IPR009057Homeodomain-like
CDDcd001678.86E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGPWTTR EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRVKNNT  120
AGNKSKCMGQ PAGKRSGANS NKKRKRNQRE LDSEAICSEN GETAIKIKIH LPKATRVSPS  180
SVAKNINVNI QSMIGSSSRH AKIGDNANWG ISGLEVVSND GEAWAFNSEE FDGLVYDHDS  240
SCPNSLPNDI MLDDIFEEYQ ELLKPDDHGQ LDSLVDSLIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G144200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304570.10.0transcription factor MYB4
TrEMBLB9GXU60.0B9GXU6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-66myb domain protein 111