![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G143000.1 | ||||||||
Common Name | POPTR_0003s14300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 1001aa MW: 109968 Da PI: 5.6643 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.4 | 6.7e-29 | 592 | 643 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk Lgvc+T++KriCRq+GI+RWP+Rki+++ Potri.003G143000.1 592 AEKTISLEVLQQYFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKV 643 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.302 | 582 | 663 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.3E-26 | 595 | 643 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.6E-22 | 897 | 988 | No hit | No description |
SMART | SM00666 | 5.5E-25 | 904 | 986 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 24.619 | 904 | 986 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 7.0E-26 | 904 | 985 | No hit | No description |
CDD | cd06407 | 1.63E-34 | 905 | 985 | No hit | No description |
Pfam | PF00564 | 7.2E-18 | 905 | 985 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1001 aa Download sequence Send to blast |
MQKPIEGRGV GGGGGEPEGM KSMELDLDLD NSWPLDQISF MSSNPMSPFL ISTSTEQPCS 60 PLWAFSDAVD DRLAATASGQ ASPAFAAAAA PRLSDYPILL TCNPNLITES QGENDDNSKL 120 PSPFLGLMPI DNPDGYCMIK ERMTQALRYF KESTEQHVLA QVWAPVKNGG QHVLTTSGQP 180 FVLDPHSNGL HQYRMVSLMY MFSVDGESDR ELGLPGRVFR QKSPEWTPNV QYYSSKEYSR 240 LDHALRYNVR GTLALPVFEP SGQSCVGVLE LIMNSQKINY APEVDKVCKA LEAVNLKSSE 300 ILDPPSIQIC NEGRQNALSE ILEILTMVCE THKLPLAQTW VPCIHRSVLT YGGGLKKSCT 360 SFDGNCNGQV CMSTTDVAFY VVDARMWGFR EACLEHHLQK GQGVAGRAFL SQNSCFCPDI 420 TQFCKTEYPL VHYARMFGLT SCFAIFLRSS YTGDDDYILE FFLPPSITDS HEQKTFLGSI 480 LATMKQDFQS LKVASGMDLE EEGFVEMIEA TTNGRLECIQ IPQPTKSPPG DNMLPNEGHI 540 EQIDSEKNKL MFDLDVIKNG GSAVQADRRQ TPPSHPEKKG TKKPTERKRG KAEKTISLEV 600 LQQYFAGSLK DAAKRLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KWVIESVQGT 660 EGTFDLTPLT TSPLHVADGT ISWPSNLNGS NQQTSPNSKP PEYHGNRNGS PTCRKPGSDG 720 QAGFEDQLLG YRILSQEKLT VQNRFSPELG RGSNRSKKRS GSRDGSAGTP TSHDSCQGSP 780 ENESAPVKDP SVSPVHERCI KAGGSPGLAL QQTKEQNLSS AYSIPDALVA TEAHEPFGGM 840 LIEDAGSSKD LRNLCPAVAE AIVDERVPES SWTDPPCFNM LPTQMFAAPL HAIPQATPRQ 900 EMKSVTIKAT YREDVIRFRI SLSSGIVELK EEVAKRLKLE VGTFDIKYLD DDQEWVLIAC 960 DADLLECMDV SRSSSSNIIR LSVHDANANL GSSCESTGEL * |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G143000.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453644.1 | 0.0 | protein NLP7 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A2K2B726 | 0.0 | A0A2K2B726_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s14300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4257 | 34 | 56 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G143000.1 |
Entrez Gene | 7497869 |